RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 IFNGR2P38484 337 aa8.82□□□□□ -1
VPS39-205ENST00000562258 KCNJ5P48544 419 aa8.82□□□□□ -1
VPS39-205ENST00000562258 INPP1P49441 399 aa8.82□□□□□ -1
VPS39-205ENST00000562258 PER3P56645 1201 aa8.82□□□□□ -1
VPS39-205ENST00000562258 GANABQ14697 944 aaKnown RBP8.82□□□□□ -1
VPS39-205ENST00000562258 DECR1Q16698 335 aa8.82□□□□□ -1
VPS39-205ENST00000562258 DCAF12Q5T6F0 453 aa8.82□□□□□ -1
VPS39-205ENST00000562258 DEPDC1Q5TB30 811 aa8.82□□□□□ -1
VPS39-205ENST00000562258 RAB11FIP2Q7L804 512 aa8.82□□□□□ -1
VPS39-205ENST00000562258 PELI3Q8N2H9 469 aa8.82□□□□□ -1
VPS39-205ENST00000562258 RIT1Q92963 219 aa8.82□□□□□ -1
VPS39-205ENST00000562258 ZNF419Q96HQ0 510 aaPredicted RBP8.82□□□□□ -1
VPS39-205ENST00000562258 CGREF1Q99674 301 aa8.82□□□□□ -1
VPS39-205ENST00000562258 GORASP1Q9BQQ3 440 aa8.82□□□□□ -1
VPS39-205ENST00000562258 GPN2Q9H9Y4 310 aaPredicted RBP8.82□□□□□ -1
VPS39-205ENST00000562258 UCKL1Q9NWZ5 548 aa8.82□□□□□ -1
VPS39-205ENST00000562258 TAS2R9Q9NYW1 312 aa8.82□□□□□ -1
VPS39-205ENST00000562258 SH3BGRL2Q9UJC5 107 aa8.82□□□□□ -1
VPS39-205ENST00000562258 C3orf18Q9UK00 162 aa8.82□□□□□ -1
VPS39-205ENST00000562258 ALPK2Q86TB3 2170 aa8.82□□□□□ -1
VPS39-205ENST00000562258 A0A1W2PQF6 199 aa8.82□□□□□ -1
VPS39-205ENST00000562258 EIF3FO00303 357 aaPredicted RBP8.82□□□□□ -1
VPS39-205ENST00000562258 DNAJA2O60884 412 aa8.82□□□□□ -1
VPS39-205ENST00000562258 PLGP00747 810 aaPredicted RBP8.82□□□□□ -1
VPS39-205ENST00000562258 IFNW1P05000 195 aa8.82□□□□□ -1
VPS39-205ENST00000562258 CELA2BP08218 269 aaPredicted RBP8.82□□□□□ -1
VPS39-205ENST00000562258 DNAJB13P59910 316 aa8.82□□□□□ -1
VPS39-205ENST00000562258 TYW3Q6IPR3 259 aaKnown RBP8.82□□□□□ -1
VPS39-205ENST00000562258 TMEM184AQ6ZMB5 413 aa8.82□□□□□ -1
VPS39-205ENST00000562258 TMEM151BQ8IW70 566 aa8.82□□□□□ -1
VPS39-205ENST00000562258 CLECL1Q8IZS7 167 aa8.82□□□□□ -1
VPS39-205ENST00000562258 NLGN4YQ8NFZ3 816 aaPredicted RBP8.82□□□□□ -1
VPS39-205ENST00000562258 DNAJC9Q8WXX5 260 aa8.82□□□□□ -1
VPS39-205ENST00000562258 TADA1Q96BN2 335 aa8.82□□□□□ -1
VPS39-205ENST00000562258 BMFQ96LC9 184 aa8.82□□□□□ -1
VPS39-205ENST00000562258 NSMCE3Q96MG7 304 aa8.82□□□□□ -1
VPS39-205ENST00000562258 ZNF304Q9HCX3 659 aa8.82□□□□□ -1
VPS39-205ENST00000562258 EPHA6Q9UF33 1036 aa8.82□□□□□ -1
VPS39-205ENST00000562258 HCRTR2O43614 444 aa8.81□□□□□ -1
VPS39-205ENST00000562258 UGT2B17O75795 530 aa8.81□□□□□ -1
VPS39-205ENST00000562258 KRT36O76013 467 aa8.81□□□□□ -1
VPS39-205ENST00000562258 LINGO3P0C6S8 592 aa8.81□□□□□ -1
VPS39-205ENST00000562258 FCGR1AP12314 374 aa8.81□□□□□ -1
VPS39-205ENST00000562258 AOC1P19801 751 aa8.81□□□□□ -1
VPS39-205ENST00000562258 CD247P20963 164 aa8.81□□□□□ -1
VPS39-205ENST00000562258 CBLP22681 906 aa8.81□□□□□ -1
VPS39-205ENST00000562258 DSTNP60981 165 aa8.81□□□□□ -1
VPS39-205ENST00000562258 IZUMO2Q6UXV1 221 aa8.81□□□□□ -1
VPS39-205ENST00000562258 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.81□□□□□ -1
VPS39-205ENST00000562258 CRIPAKQ8N1N5 446 aa8.81□□□□□ -1
VPS39-205ENST00000562258 OR2L3Q8NG85 312 aa8.81□□□□□ -1
VPS39-205ENST00000562258 OR6C4Q8NGE1 309 aa8.81□□□□□ -1
VPS39-205ENST00000562258 ECHDC3Q96DC8 303 aa8.81□□□□□ -1
VPS39-205ENST00000562258 GUCD1Q96NT3 240 aa8.81□□□□□ -1
VPS39-205ENST00000562258 LYSMD1Q96S90 227 aa8.81□□□□□ -1
VPS39-205ENST00000562258 RTKNQ9BST9 563 aa8.81□□□□□ -1
VPS39-205ENST00000562258 EPB41L4BQ9H329 900 aa8.81□□□□□ -1
VPS39-205ENST00000562258 GEMIN8Q9NWZ8 242 aaKnown RBP8.81□□□□□ -1
VPS39-205ENST00000562258 TAS2R1Q9NYW7 299 aa8.81□□□□□ -1
VPS39-205ENST00000562258 PADI1Q9ULC6 663 aa8.81□□□□□ -1
VPS39-205ENST00000562258 DYTNA2CJ06 578 aa8.81□□□□□ -1
VPS39-205ENST00000562258 SCDO00767 359 aa8.81□□□□□ -1
VPS39-205ENST00000562258 ARHGAP33O14559 1287 aa8.81□□□□□ -1
VPS39-205ENST00000562258 LAMP1P11279 417 aa8.81□□□□□ -1
VPS39-205ENST00000562258 FCARP24071 287 aa8.81□□□□□ -1
VPS39-205ENST00000562258 CDH12P55289 794 aa8.81□□□□□ -1
VPS39-205ENST00000562258 HSD11B2P80365 405 aa8.81□□□□□ -1
VPS39-205ENST00000562258 DPTQ07507 201 aa8.81□□□□□ -1
VPS39-205ENST00000562258 ENPP2Q13822 863 aa8.81□□□□□ -1
VPS39-205ENST00000562258 SMARCD3Q6STE5 483 aa8.81□□□□□ -1
VPS39-205ENST00000562258 RNF111Q6ZNA4 994 aa8.81□□□□□ -1
VPS39-205ENST00000562258 RTL4Q6ZR62 310 aa8.81□□□□□ -1
VPS39-205ENST00000562258 EIF3MQ7L2H7 374 aaKnown RBP8.81□□□□□ -1
VPS39-205ENST00000562258 RBM12BQ8IXT5 1001 aaKnown RBP8.81□□□□□ -1
VPS39-205ENST00000562258 ST13P4Q8IZP2 240 aaPredicted RBP8.81□□□□□ -1
VPS39-205ENST00000562258 DIO2Q92813 273 aa8.81□□□□□ -1
VPS39-205ENST00000562258 FATE1Q969F0 183 aa8.81□□□□□ -1
VPS39-205ENST00000562258 EID2BQ96D98 161 aa8.81□□□□□ -1
VPS39-205ENST00000562258 AP3M1Q9Y2T2 418 aa8.81□□□□□ -1
VPS39-205ENST00000562258 PCNX1Q96RV3 2341 aa8.81□□□□□ -1
VPS39-205ENST00000562258 BBIP1A8MTZ0 92 aa8.81□□□□□ -1
VPS39-205ENST00000562258 CLOCKO15516 846 aa8.81□□□□□ -1
VPS39-205ENST00000562258 DFNA5O60443 496 aa8.81□□□□□ -1
VPS39-205ENST00000562258 ZCCHC18P0CG32 403 aa8.81□□□□□ -1
VPS39-205ENST00000562258 IMPDH2P12268 514 aa8.81□□□□□ -1
VPS39-205ENST00000562258 ST6GAL1P15907 406 aa8.81□□□□□ -1
VPS39-205ENST00000562258 CTC1Q2NKJ3 1217 aa8.81□□□□□ -1
VPS39-205ENST00000562258 ABHD17BQ5VST6 288 aa8.81□□□□□ -1
VPS39-205ENST00000562258 GALNT5Q7Z7M9 940 aa8.81□□□□□ -1
VPS39-205ENST00000562258 OR52L1Q8NGH7 329 aa8.81□□□□□ -1
VPS39-205ENST00000562258 AGAP11Q8TF27 550 aa8.81□□□□□ -1
VPS39-205ENST00000562258 GAB3Q8WWW8 586 aa8.81□□□□□ -1
VPS39-205ENST00000562258 WDR83Q9BRX9 315 aaKnown RBP8.81□□□□□ -1
VPS39-205ENST00000562258 LRRC61Q9BV99 259 aa8.81□□□□□ -1
VPS39-205ENST00000562258 TAPBPLQ9BX59 468 aa8.81□□□□□ -1
VPS39-205ENST00000562258 ZDHHC5Q9C0B5 715 aa8.81□□□□□ -1
VPS39-205ENST00000562258 CUTCQ9NTM9 273 aa8.81□□□□□ -1
VPS39-205ENST00000562258 MKLN1Q9UL63 735 aa8.81□□□□□ -1
VPS39-205ENST00000562258 CFL2Q9Y281 166 aa8.81□□□□□ -1
VPS39-205ENST00000562258 LMO7DNF2Z398 122 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms