RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 PHF10Q8WUB8 498 aaKnown RBP10.83□□□□□ -0.68
USP3-220ENST00000561381 ZNF775Q96BV0 537 aaPredicted RBP10.83□□□□□ -0.68
USP3-220ENST00000561381 SDCCAG3Q96C92 435 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 VMP1Q96GC9 406 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 VKORC1Q9BQB6 163 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 NPLQ9BXD5 320 aaPredicted RBP10.83□□□□□ -0.68
USP3-220ENST00000561381 DERL2Q9GZP9 239 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 DEPPQ9NTK1 212 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 KCMF1Q9P0J7 381 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 ZNF490Q9ULM2 529 aaPredicted RBP10.83□□□□□ -0.68
USP3-220ENST00000561381 PPIEQ9UNP9 301 aaKnown RBP10.83□□□□□ -0.68
USP3-220ENST00000561381 ZNF407Q9C0G0 2248 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 OTOGQ6ZRI0 2925 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 A0A0G2JMM0 328 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 A0A1W2PPB8 328 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 A0A1W2PRS3 328 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 PINLYPA6NC86 204 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 KIR3DP1A8MWS1 328 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 KLRC4-KLRK1H3BQV0 150 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 CLDN4O14493 209 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 FANCGO15287 622 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 B3GALT2O43825 422 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 CLEC3AO75596 197 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 OR2J2O76002 312 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 EPORP19235 508 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 TFEBP19484 476 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 SSTR1P30872 391 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 PTGS2P35354 604 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 SSR4P51571 173 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 SLC12A2P55011 1212 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 LIM2P55344 173 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 HSD17B7P56937 341 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 GNG11P61952 73 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 PRR20EP86478 221 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 PRR20CP86479 221 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 PRR20DP86480 221 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 PRR20BP86481 221 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 PRR20AP86496 221 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 TERF2Q15554 542 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 OR4D1Q15615 310 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 ADPRMQ3LIE5 342 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 ABHD17CQ6PCB6 329 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 KRT78Q8N1N4 520 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 RPRMLQ8N4K4 120 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 ZNF321PQ8N8H1 164 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 SNX31Q8N9S9 440 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 ZFP62Q8NB50 900 aaPredicted RBP10.82□□□□□ -0.68
USP3-220ENST00000561381 POGLUT1Q8NBL1 392 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 TTLQ8NG68 377 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 OR2L5Q8NG80 312 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 C16orf52Q8NHV5 167 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 FAM57AQ8TBR7 257 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 RUNDC3BQ96NL0 473 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 F2RL3Q96RI0 385 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 KRT12Q99456 494 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 REXO4Q9GZR2 422 aaKnown RBP10.82□□□□□ -0.68
USP3-220ENST00000561381 NT5DC2Q9H857 520 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 POPDC3Q9HBV1 291 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 ADAP2Q9NPF8 381 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 DNAJC11Q9NVH1 559 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 WWOXQ9NZC7 414 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 ITGB1BP2Q9UKP3 347 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 F8P00451 2351 aa10.82□□□□□ -0.68
USP3-220ENST00000561381 DNAJC13O75165 2243 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 DCHS2Q6V1P9 2916 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 ANKDD1BA6NHY2 528 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 G3V3Y1 287 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 WWP2O00308 870 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 ZFAND5O76080 213 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 OR6B1O95007 311 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 IFNA16P05015 189 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 CCDC166P0CW27 439 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 CD1DP15813 335 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 GGT5P36269 586 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 MTTPP55157 894 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 POU4F1Q01851 419 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 BMPR2Q13873 1038 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 DOC2AQ14183 400 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 TRIM40Q6P9F5 258 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 IL20RBQ6UXL0 311 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 ZNF793Q6ZN11 406 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 CEP128Q6ZU80 1094 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 UBE3DQ7Z6J8 389 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 GPSM1Q86YR5 675 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 ZNF595Q8IYB9 648 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 ACBD4Q8NC06 268 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 PSD4Q8NDX1 1056 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 CA5BP1Q8WTZ4 195 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 PTPMT1Q8WUK0 201 aaPredicted RBP10.81□□□□□ -0.68
USP3-220ENST00000561381 EXT2Q93063 718 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 SERINC2Q96SA4 455 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 CCDC77Q9BR77 488 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 DEFB127Q9H1M4 99 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 PRDM7Q9NQW5 492 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 GPRC5BQ9NZH0 403 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 DAPP1Q9UN19 280 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 ERVK-11Q9UQG0 969 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 YARS2Q9Y2Z4 477 aaKnown RBP10.81□□□□□ -0.68
USP3-220ENST00000561381 SAR1BQ9Y6B6 198 aa10.81□□□□□ -0.68
USP3-220ENST00000561381 ADGRG4Q8IZF6 3080 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms