RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 DNASE1L3Q13609 305 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 HEPACAMQ14CZ8 416 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 RPS6KA2Q15349 733 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 GALNTL6Q49A17 601 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 C6orf136Q5SQH8 315 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 ZNF385CQ66K41 422 aaPredicted RBP8.73□□□□□ -1.01
LDLR-210ENST00000559340 NXNQ6DKJ4 435 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 ZNF517Q6ZMY9 492 aaPredicted RBP8.73□□□□□ -1.01
LDLR-210ENST00000559340 ATG14Q6ZNE5 492 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 LRRC69Q6ZNQ3 347 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 MED25Q71SY5 747 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 TIPARPQ7Z3E1 657 aaKnown RBP8.73□□□□□ -1.01
LDLR-210ENST00000559340 COMMD6Q7Z4G1 85 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 UBE3DQ7Z6J8 389 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 CPLX4Q7Z7G2 160 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 DTX1Q86Y01 620 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 ZNF595Q8IYB9 648 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 CA13Q8N1Q1 262 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 FNDC5Q8NAU1 212 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 SLC38A9Q8NBW4 561 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 SNIP1Q8TAD8 396 aaKnown RBP8.73□□□□□ -1.01
LDLR-210ENST00000559340 ACTRT2Q8TDY3 377 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 KCNE4Q8WWG9 221 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 STARD8Q92502 1023 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 NKD1Q969G9 470 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 PMEPA1Q969W9 287 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 TBC1D20Q96BZ9 403 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 APIPQ96GX9 242 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 CCDC28BQ9BUN5 200 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 TGIF2Q9GZN2 237 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 AICDAQ9GZX7 198 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 GPN2Q9H9Y4 310 aaPredicted RBP8.73□□□□□ -1.01
LDLR-210ENST00000559340 PRDM9Q9NQV7 894 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 NOP53Q9NZM5 478 aaKnown RBP8.73□□□□□ -1.01
LDLR-210ENST00000559340 RALYQ9UKM9 306 aaKnown RBP8.73□□□□□ -1.01
LDLR-210ENST00000559340 DAPP1Q9UN19 280 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 MRPS2Q9Y399 296 aaKnown RBP8.73□□□□□ -1.01
LDLR-210ENST00000559340 MMACHCQ9Y4U1 282 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 CCL27Q9Y4X3 112 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 IGLV3-12A0A075B6K2 115 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 GOLGA8QA0A0J9YX86 632 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 C1orf226A1L170 272 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 GOLGA8OA6NCC3 632 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 ZNF860A6NHJ4 632 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 GOLGA8NF8WBI6 632 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 RTCAO00442 366 aaKnown RBP8.72□□□□□ -1.01
LDLR-210ENST00000559340 SDHDO14521 159 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 LSM1O15116 133 aaKnown RBP8.72□□□□□ -1.01
LDLR-210ENST00000559340 DIAPH2O60879 1101 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 BMP10O95393 424 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 MED26O95402 600 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 RECKO95980 971 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 HEXBP07686 556 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 FHP07954 510 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 ALOX15P16050 662 aaPredicted RBP8.72□□□□□ -1.01
LDLR-210ENST00000559340 LSP1P33241 339 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 DLSTP36957 453 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 FOLR3P41439 243 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 XCR1P46094 333 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 AQP5P55064 265 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 LIM2P55344 173 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 RPL38P63173 70 aaKnown RBP8.72□□□□□ -1.01
LDLR-210ENST00000559340 ZNF763Q0D2J5 394 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 RUNX2Q13950 521 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 COL9A2Q14055 689 aaPredicted RBP8.72□□□□□ -1.01
LDLR-210ENST00000559340 NCF4Q15080 339 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 MFSD4BQ5TF39 518 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 BROXQ5VW32 411 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 MRM1Q6IN84 353 aaKnown RBP8.72□□□□□ -1.01
LDLR-210ENST00000559340 NOXRED1Q6NXP6 359 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 MRPL14Q6P1L8 145 aaKnown RBP8.72□□□□□ -1.01
LDLR-210ENST00000559340 EPGNQ6UW88 154 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 ZNF793Q6ZN11 406 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 IKBIPQ70UQ0 350 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 R3HCC1LQ7Z5L2 792 aaKnown RBP8.72□□□□□ -1.01
LDLR-210ENST00000559340 PDSS2Q86YH6 399 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 SAMD14Q8IZD0 417 aaPredicted RBP8.72□□□□□ -1.01
LDLR-210ENST00000559340 METTL27Q8N6F8 245 aaPredicted RBP8.72□□□□□ -1.01
LDLR-210ENST00000559340 EFCAB3Q8N7B9 438 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 ZSCAN1Q8NBB4 408 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 PLPP5Q8NEB5 264 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 STT3BQ8TCJ2 826 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 CT55Q8WUE5 264 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 METTL21AQ8WXB1 218 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 TANKQ92844 425 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 NACC2Q96BF6 587 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 PEX11GQ96HA9 241 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 RILPQ96NA2 401 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 IP6K3Q96PC2 410 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 PRPF18Q99633 342 aaKnown RBP8.72□□□□□ -1.01
LDLR-210ENST00000559340 AKTIPQ9H8T0 292 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 GIMAP4Q9NUV9 329 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 FGFR1OP2Q9NVK5 253 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 WDR70Q9NW82 654 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 ASIC5Q9NY37 505 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 HCN3Q9P1Z3 774 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 C19orf25Q9UFG5 118 aaPredicted RBP8.72□□□□□ -1.01
LDLR-210ENST00000559340 CROTQ9UKG9 612 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 FBXW2Q9UKT8 454 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 TRIM33Q9UPN9 1127 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms