RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 PIAS1O75925 651 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 FAM155BO75949 473 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 FBXO45P0C2W1 286 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 ZNF888P0CJ79 500 aaPredicted RBP8.17□□□□□ -1.1
USP3-208ENST00000558285 PCNAP12004 261 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 PIK3CBP42338 1070 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 CASP2P42575 452 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 PSMD7P51665 324 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 OR4D2P58180 307 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 PCDH1Q08174 1060 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 MFAP5Q13361 173 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 BMPR2Q13873 1038 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 ABRAXAS2Q15018 415 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 PCBP2Q15366 365 aaKnown RBP eCLIP8.17□□□□□ -1.11e-9■■■■■ 32.1
USP3-208ENST00000558285 INAQ16352 499 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 SWI5Q1ZZU3 235 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 TMEM205Q6UW68 189 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 QSOX2Q6ZRP7 698 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 SLC22A9Q8IVM8 553 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.17□□□□□ -1.1
USP3-208ENST00000558285 ZNF595Q8IYB9 648 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 SPATA6LQ8N4H0 392 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 PLPP5Q8NEB5 264 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 UTP15Q8TED0 518 aaKnown RBP8.17□□□□□ -1.1
USP3-208ENST00000558285 KCTD4Q8WVF5 259 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 NXNL1Q96CM4 212 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 TLCD1Q96CP7 247 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 PEX11GQ96HA9 241 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 QRFPRQ96P65 431 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 ZNF317Q96PQ6 595 aaPredicted RBP8.17□□□□□ -1.1
USP3-208ENST00000558285 NUDT9Q9BW91 350 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 RHBGQ9H310 441 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 WDR41Q9HAD4 459 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 PRDM9Q9NQV7 894 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 DCDC2Q9UHG0 476 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 IGSF10Q6WRI0 2623 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 IGHV1-45A0A0A0MS14 117 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 TRAV17A0A0B4J275 112 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 TRIM49D1C9J1S8 452 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 UBXN8O00124 270 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 RIPK2O43353 540 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 CHST10O43529 356 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 NRP2O60462 931 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 CNOT3O75175 753 aaKnown RBP8.17□□□□□ -1.1
USP3-208ENST00000558285 OTCP00480 354 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 C1QAP02745 245 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 COX6A1P12074 109 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 COX7A2P14406 83 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 PTX3P26022 381 aaPredicted RBP8.17□□□□□ -1.1
USP3-208ENST00000558285 MAPK1P28482 360 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 GDF5P43026 501 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 GLRBP48167 497 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 HSD17B7P56937 341 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 RAB8AP61006 207 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 NCALDP61601 193 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 BTN3A2P78410 334 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 TAGLNQ01995 201 aaKnown RBP8.17□□□□□ -1.1
USP3-208ENST00000558285 EEF1A2Q05639 463 aaKnown RBP8.17□□□□□ -1.1
USP3-208ENST00000558285 ASPHQ12797 758 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 BNIP1Q12981 228 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 DOC2AQ14183 400 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 PCM1Q15154 2024 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 GSTA3Q16772 222 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 BTBD16Q32M84 506 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 PLAG1Q6DJT9 500 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 FAAH2Q6GMR7 532 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 GRHL2Q6ISB3 625 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 LGI4Q8N135 537 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 FAM98AQ8NCA5 519 aaKnown RBP8.17□□□□□ -1.1
USP3-208ENST00000558285 DNAJB14Q8TBM8 379 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 M1APQ8TC57 530 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 CPT1CQ8TCG5 803 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 UBLCP1Q8WVY7 318 aaPredicted RBP8.17□□□□□ -1.1
USP3-208ENST00000558285 C17orf50Q8WW18 174 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 ISL2Q96A47 359 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 RGMAQ96B86 450 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 PTCHD1Q96NR3 888 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 ATOH8Q96SQ7 321 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 TMEM79Q9BSE2 394 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 UNKQ9C0B0 810 aaKnown RBP8.17□□□□□ -1.1
USP3-208ENST00000558285 VN1R1Q9GZP7 353 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 RNF32Q9H0A6 362 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 LYRM4Q9HD34 91 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 EGFL7Q9UHF1 273 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 PHF11Q9UIL8 331 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 SH2B3Q9UQQ2 575 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 LRCH1Q9Y2L9 728 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 TSC22D4Q9Y3Q8 395 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 L3MBTL1Q9Y468 752 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 SEC16AO15027 2179 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 ITPR1Q14643 2758 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 ARHGAP10A1A4S6 786 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 LRIT2A6NDA9 550 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 FCHO1O14526 889 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 TAPBPO15533 448 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 E2F6O75461 281 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 CLDN9O95484 217 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 ALDOAP04075 364 aaKnown RBP8.16□□□□□ -1.1
USP3-208ENST00000558285 PRR35P0CG20 571 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 KRT15P19012 456 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms