RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 NDUFAF7Q7L592 441 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 NUDT13Q86X67 352 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 C9orf43Q8TAL5 461 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-228ENST00000557302 SLC39A7Q92504 469 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 CNDP1Q96KN2 507 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 PTCHD1Q96NR3 888 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 TRMOQ9BU70 441 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 MECRQ9BV79 373 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 ZNF700Q9H0M5 742 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 BRF2Q9HAW0 419 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 KCNK9Q9NPC2 374 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 PRDM9Q9NQV7 894 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 RIC8BQ9NVN3 520 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 AHSPQ9NZD4 102 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 G3BP2Q9UN86 482 aaKnown RBP12.79□□□□□ -0.36
SHMT2-228ENST00000557302 SLC12A4Q9UP95 1085 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 MMACHCQ9Y4U1 282 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 SPACA6W5XKT8 324 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 GCN1Q92616 2671 aaKnown RBP12.79□□□□□ -0.36
SHMT2-228ENST00000557302 PCSK5Q92824 1860 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 IGHV1-45A0A0A0MS14 117 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 NSG1A0A0A6YYJ2 146 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 A6NL46 340 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 MASP2O00187 686 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 CLDN4O14493 209 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 UBFD1O14562 309 aaKnown RBP12.78□□□□□ -0.36
SHMT2-228ENST00000557302 TM9SF1O15321 606 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 EEDO75530 441 aaKnown RBP12.78□□□□□ -0.36
SHMT2-228ENST00000557302 BPGMP07738 259 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 HSD3B1P14060 373 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 H2AFXP16104 143 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-228ENST00000557302 HSD3B2P26439 372 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 BSGP35613 385 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 ETV4P43268 484 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 SLAMF1Q13291 335 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 FAM219BQ5XKK7 198 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 CYP20A1Q6UW02 462 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 CPEB2Q7Z5Q1 589 aaKnown RBP12.78□□□□□ -0.36
SHMT2-228ENST00000557302 ANKRD37Q7Z713 158 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 ZCCHC7Q8N3Z6 543 aaKnown RBP12.78□□□□□ -0.36
SHMT2-228ENST00000557302 GALNT16Q8N428 558 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 FAM47BQ8NA70 645 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 TSLPQ969D9 159 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 ABHD17AQ96GS6 310 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 KCNA7Q96RP8 456 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 HBEGFQ99075 208 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 MAPKAP1Q9BPZ7 522 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 SLC25A23Q9BV35 468 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 ZNF717Q9BY31 904 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-228ENST00000557302 DDX31Q9H8H2 851 aaKnown RBP12.78□□□□□ -0.36
SHMT2-228ENST00000557302 TMBIM4Q9HC24 238 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 ZNF160Q9HCG1 818 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 NMRK1Q9NWW6 199 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 KCMF1Q9P0J7 381 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 PHF11Q9UIL8 331 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 TIMM22Q9Y584 194 aa12.78□□□□□ -0.36
SHMT2-228ENST00000557302 FASNP49327 2511 aaKnown RBP12.78□□□□□ -0.36
SHMT2-228ENST00000557302 BOD1L1Q8NFC6 3051 aa12.77□□□□□ -0.36
SHMT2-228ENST00000557302 IGHV3-20A0A0C4DH32 117 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 BLACEA4D250 179 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 EIF4E1BA6NMX2 242 aaKnown RBP12.77□□□□□ -0.37
SHMT2-228ENST00000557302 CYR61O00622 381 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 NPHS1O60500 1241 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 KLHL41O60662 606 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 CEACAM4O75871 244 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 ZWINTO95229 277 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 MAOAP21397 527 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 CPN2P22792 545 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 ITGA3P26006 1051 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 SERPINB4P48594 390 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 HTR6P50406 440 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 HSD17B7P56937 341 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 SOX8P57073 446 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 OR4D2P58180 307 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 BTG2P78543 158 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 ZNF33BQ06732 778 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 ACTN3Q08043 901 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-228ENST00000557302 CSTF3Q12996 717 aaKnown RBP12.77□□□□□ -0.37
SHMT2-228ENST00000557302 SLC13A2Q13183 592 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 PCOLCEQ15113 449 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 SFT2D3Q587I9 215 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 IRAK1BP1Q5VVH5 260 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 PAGE2Q7Z2X7 111 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 GPR180Q86V85 440 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 NUDCD3Q8IVD9 361 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 SCUBE1Q8IWY4 988 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 PARP9Q8IXQ6 854 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 ZNF595Q8IYB9 648 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 EFCAB3Q8N7B9 438 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 GBP7Q8N8V2 638 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-228ENST00000557302 CSF3RQ99062 836 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 TUBB6Q9BUF5 446 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 MRPL1Q9BYD6 325 aaKnown RBP12.77□□□□□ -0.37
SHMT2-228ENST00000557302 SHCBP1LQ9BZQ2 653 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 SEMA4CQ9C0C4 833 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 SLC25A18Q9H1K4 315 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 PRTFDC1Q9NRG1 225 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 LYARQ9NX58 379 aaKnown RBP12.77□□□□□ -0.37
SHMT2-228ENST00000557302 MS4A12Q9NXJ0 267 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 GPR83Q9NYM4 423 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms