RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 SLC5A8Q8N695 610 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 ZFP62Q8NB50 900 aaPredicted RBP4.39□□□□□ -1.71
SCFD1-223ENST00000557076 BEND2Q8NDZ0 799 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 OR5K2Q8NHB8 316 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 PPP1R14CQ8TAE6 165 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 CREB3L4Q8TEY5 395 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 HEXDCQ8WVB3 486 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 METTL21AQ8WXB1 218 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 HSPH1Q92598 858 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 RNASE6Q93091 150 aaKnown RBP4.39□□□□□ -1.71
SCFD1-223ENST00000557076 TMEM125Q96AQ2 219 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 DCUN1D1Q96GG9 259 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 DCLRE1CQ96SD1 692 aaKnown RBP4.39□□□□□ -1.71
SCFD1-223ENST00000557076 AGPAT1Q99943 283 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 HGH1Q9BTY7 390 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 TRIM7Q9C029 511 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 GANQ9H2C0 597 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 COG4Q9H9E3 785 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 KCNK13Q9HB14 408 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.39□□□□□ -1.71
SCFD1-223ENST00000557076 TRPC4Q9UBN4 977 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 B4GALT7Q9UBV7 327 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 KLHL20Q9Y2M5 609 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 CHD3Q12873 2000 aaKnown RBP4.39□□□□□ -1.71
SCFD1-223ENST00000557076 ROS1P08922 2347 aa4.39□□□□□ -1.71
SCFD1-223ENST00000557076 USF3Q68DE3 2245 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 SCN2AQ99250 2005 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 LOC105369274A0A096LPK9 316 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 A0A0A6YYK5 440 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 LOC102723532A0A0G2JNH3 316 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 CENPVL1A0A0U1RR11 272 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 A0A1B0GVC2 190 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 GAGE12BA1L429 117 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 GAGE12HA6NDE8 117 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 TRIM64A6NGJ6 449 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 TRIM64BA6NI03 449 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 HSPB2A8KAH6 182 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 NPIPA2E9PIF3 369 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 NPIPA3F8WFD2 350 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 KCNK1O00180 336 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 LIN7AO14910 233 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 TLX2O43763 284 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 PEX1O43933 1283 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 MFSD11O43934 449 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 CDC40O60508 579 aaKnown RBP eCLIP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 CTSVO60911 334 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 DNAJB6O75190 326 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 PDE9AO76083 593 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 HRGP04196 525 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 CD9P21926 228 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 ZFP36P26651 326 aaKnown RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 PEBP1P30086 187 aaKnown RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 HLCSP50747 726 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 VSX2P58304 361 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 POLR2FP61218 127 aaKnown RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 PLOD1Q02809 727 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 PPIDQ08752 370 aaKnown RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 SLC10A2Q12908 348 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 PIGHQ14442 188 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 HSPB2Q16082 182 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 RIPPLY2Q5TAB7 128 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 NCBP2-AS2Q69YL0 99 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 RTL6Q6ICC9 239 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 KIAA0930Q6ICG6 404 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 FBXO42Q6P3S6 717 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 RGS9BPQ6ZS82 235 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 DOK3Q7L591 496 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 OR4N4Q8N0Y3 316 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 METTL27Q8N6F8 245 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 AMER3Q8N944 861 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 CCNYQ8ND76 341 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 OR52N2Q8NGI0 321 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 OR5AR1Q8NGP9 310 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 NTN5Q8WTR8 489 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 DACH2Q96NX9 599 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 SH3GL2Q99962 352 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 C19orf43Q9BQ61 176 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 SOX7Q9BT81 388 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 VN1R1Q9GZP7 353 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 CDCP1Q9H5V8 836 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 ZDHHC11Q9H8X9 412 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 SYNPO2LQ9H987 977 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 VPS37BQ9H9H4 285 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 PNPLA3Q9NST1 481 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 ING3Q9NXR8 418 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 ZNF629Q9UEG4 869 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 ASF1AQ9Y294 204 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 KLF13Q9Y2Y9 288 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-223ENST00000557076 PCDHGB3Q9Y5G1 929 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 FAM215AQ9Y5M1 114 aa4.38□□□□□ -1.71
SCFD1-223ENST00000557076 IGLV3-16A0A075B6K0 115 aa4.37□□□□□ -1.71
SCFD1-223ENST00000557076 IGHV3-20A0A0C4DH32 117 aa4.37□□□□□ -1.71
SCFD1-223ENST00000557076 A0A1W2PPR1 153 aa4.37□□□□□ -1.71
SCFD1-223ENST00000557076 MBD3L4A6NDZ8 208 aaPredicted RBP4.37□□□□□ -1.71
SCFD1-223ENST00000557076 MBD3L5A6NJ08 208 aaPredicted RBP4.37□□□□□ -1.71
SCFD1-223ENST00000557076 CLCA1A8K7I4 914 aa4.37□□□□□ -1.71
SCFD1-223ENST00000557076 AHRRA9YTQ3 701 aa4.37□□□□□ -1.71
SCFD1-223ENST00000557076 QSOX1O00391 747 aa4.37□□□□□ -1.71
SCFD1-223ENST00000557076 RNASET2O00584 256 aaKnown RBP4.37□□□□□ -1.71
SCFD1-223ENST00000557076 NDC80O14777 642 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms