RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	ADAM8	P78325	824 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	REEP5	Q00765	189 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	SLC13A2	Q13183	592 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	SNTB1	Q13884	538 aa	Known RBP	11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	RUNX2	Q13950	521 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	ZNF750	Q32MQ0	723 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	TOR1AIP1	Q5JTV8	583 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	WLS	Q5T9L3	541 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	NXPE4	Q6UWF7	544 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	HSDL2	Q6YN16	418 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	WDR53	Q7Z5U6	358 aa	Predicted RBP	11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	CAMKMT	Q7Z624	323 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	CTAGE6	Q86UF2	777 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	SCUBE1	Q8IWY4	988 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	TMEM132C	Q8N3T6	1108 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	TMEM251	Q8N6I4	163 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	GPATCH11	Q8N954	259 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	C2CD4A	Q8NCU7	369 aa	Predicted RBP	11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	GABPB2	Q8TAK5	448 aa	Predicted RBP	11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	SARAF	Q96BY9	339 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	FAR2	Q96K12	515 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	PWWP2A	Q96N64	755 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	ALPK1	Q96QP1	1244 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	RASL10B	Q96S79	203 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	NPL	Q9BXD5	320 aa	Predicted RBP	11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	LDAH	Q9H6V9	325 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	PELI2	Q9HAT8	420 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	ADAP2	Q9NPF8	381 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	DYRK1B	Q9Y463	629 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	LIPG	Q9Y5X9	500 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	CLCA3P	Q9Y6N3	262 aa		11.74	□□□□□ -0.53
SHMT2-223	ENST00000556689	MAP1A	P78559	2803 aa	Predicted RBP	11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689		A0A0G2JMM0	328 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	ATP6AP2	A0A1C7CYW4	349 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689		A0A1W2PPB8	328 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689		A0A1W2PRS3	328 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	KIR3DP1	A8MWS1	328 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	ESPN	B1AK53	854 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	ATP6AP2	O75787	350 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	IFNA16	P05015	189 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	GABRA1	P14867	456 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	SAT1	P21673	171 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	SOX3	P41225	446 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	MAN2A2	P49641	1150 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	HYAL4	Q2M3T9	481 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	C1orf185	Q5T7R7	199 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	RTL4	Q6ZR62	310 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	THOC6	Q86W42	341 aa	Known RBP	11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	CDC20B	Q86Y33	519 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	MBD6	Q96DN6	1003 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	SIGLEC10	Q96LC7	697 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	SGCZ	Q96LD1	299 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	C16orf45	Q96MC5	204 aa	Predicted RBP	11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	CRIM1	Q9NZV1	1036 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	B4GALT7	Q9UBV7	327 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	KCNE2	Q9Y6J6	123 aa		11.73	□□□□□ -0.53
SHMT2-223	ENST00000556689	SYNDIG1L	A6NDD5	238 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689		A6NNC1	897 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	C4orf51	C9J302	202 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	TGFBR3L	H3BV60	316 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	HCN1	O60741	890 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	H2AFY	O75367	372 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	AHSG	P02765	367 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689		P04436	131 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	ENO2	P09104	434 aa	Predicted RBP	11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	GABRB3	P28472	473 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	UQCRC1	P31930	480 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	MAGEA3	P43357	314 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	HK2	P52789	917 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	RAB38	P57729	211 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	GNG11	P61952	73 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	FOXO1	Q12778	655 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	PDAP1	Q13442	181 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	ELAVL1	Q15717	326 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	RBM20	Q5T481	1227 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	RIPPLY2	Q5TAB7	128 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	FAM47E	Q6ZV65	393 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	TMPRSS11B	Q86T26	416 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	ZNF595	Q8IYB9	648 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	AGGF1	Q8N302	714 aa	eCLIP	11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	GOLM1	Q8NBJ4	401 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	MORN4	Q8NDC4	146 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	FAM222B	Q8WU58	562 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	DAZL	Q92904	295 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	GAL3ST3	Q96A11	431 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	LRRC46	Q96FV0	321 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	SCYL1	Q96KG9	808 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	CNPPD1	Q9BV87	410 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	AICDA	Q9GZX7	198 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	EXO5	Q9H790	373 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	SACM1L	Q9NTJ5	587 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	SLC22A14	Q9Y267	594 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	MRPS33	Q9Y291	106 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	CLDN16	Q9Y5I7	305 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	ABCA2	Q9BZC7	2435 aa		11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	PHF3	Q92576	2039 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-223	ENST00000556689	VPS13C	Q709C8	3753 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689		A0A088AWK7	358 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689	TRGV5	A0A0B4J1U4	118 aa		11.71	□□□□□ -0.53
SHMT2-223	ENST00000556689		A0A0G2JN53	185 aa		11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms