RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 DOHHQ9BU89 302 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 VNN3Q9NY84 501 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 ZFC3H1O60293 1989 aaKnown RBP14.22□□□□□ -0.13
CUX1-215ENST00000556210 CABIN1Q9Y6J0 2220 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 FAM25AB3EWG3 89 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 FAM25CB3EWG5 89 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 FAM25GB3EWG6 89 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 FZD6O60353 706 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 BMP4P12644 408 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 CCT3P49368 545 aaKnown RBP14.22□□□□□ -0.13
CUX1-215ENST00000556210 CCR4P51679 360 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 PNLIPRP1P54315 467 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 PFN3P60673 137 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 ZNF730Q6ZMV8 503 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 SHFQ7M4L6 423 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 IQCHQ86VS3 1027 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 ZZZ3Q8IYH5 903 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 ZNF557Q8N988 423 aaPredicted RBP14.22□□□□□ -0.13
CUX1-215ENST00000556210 C17orf50Q8WW18 174 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 TRMT2BQ96GJ1 504 aaKnown RBP14.22□□□□□ -0.13
CUX1-215ENST00000556210 CPPED1Q9BRF8 314 aaPredicted RBP14.22□□□□□ -0.13
CUX1-215ENST00000556210 MROQ9BYG7 248 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 TBC1D17Q9HA65 648 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 C14orf119Q9NWQ9 140 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 PRKRAO75569 313 aaKnown RBP14.22□□□□□ -0.13
CUX1-215ENST00000556210 GDI1P31150 447 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 PIN1Q13526 163 aaPredicted RBP14.22□□□□□ -0.13
CUX1-215ENST00000556210 LRRC32Q14392 662 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 GPR149Q86SP6 731 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 TMEM150AQ86TG1 271 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 PTRH1Q86Y79 214 aaKnown RBP14.22□□□□□ -0.13
CUX1-215ENST00000556210 Q8N9G6 341 aaPredicted RBP14.22□□□□□ -0.13
CUX1-215ENST00000556210 USP7Q93009 1102 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 PHOX2BQ99453 314 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 KXD1Q9BQD3 176 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 TTTY10Q9BZA0 68 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 TRIT1Q9H3H1 467 aaKnown RBP14.22□□□□□ -0.13
CUX1-215ENST00000556210 C11orf49Q9H6J7 331 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 WDR26Q9H7D7 661 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 CUEDC1Q9NWM3 386 aaPredicted RBP14.22□□□□□ -0.13
CUX1-215ENST00000556210 MAT2BQ9NZL9 334 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 ERVK-11Q9UQG0 969 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 DNMT3AQ9Y6K1 912 aaPredicted RBP14.22□□□□□ -0.13
CUX1-215ENST00000556210 ZNF638Q14966 1978 aaKnown RBP14.21□□□□□ -0.13
CUX1-215ENST00000556210 LCTP09848 1927 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 CPSF4LA6NMK7 179 aaKnown RBP14.21□□□□□ -0.13
CUX1-215ENST00000556210 PCDH17O14917 1159 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 TSC22D2O75157 780 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 SULT1C4O75897 302 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 PPP5CP53041 499 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 ZNF542PQ5EBM4 170 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 PDZK1Q5T2W1 519 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 ZFP41Q8N8Y5 198 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 DNAJA3Q96EY1 480 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 QRFPRQ96P65 431 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 GORASP2Q9H8Y8 452 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 ZBTB20Q9HC78 741 aaPredicted RBP14.21□□□□□ -0.13
CUX1-215ENST00000556210 ZW10O43264 779 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 NUAK1O60285 661 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 CCNYL3P0C7X3 344 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 KELP23276 732 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 GABARAPL2P60520 117 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 AQP6Q13520 282 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 CRB2Q5IJ48 1285 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.21□□□□□ -0.13
CUX1-215ENST00000556210 KIAA1161Q6NSJ0 714 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 USP30Q70CQ3 517 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 TRIM69Q86WT6 500 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 CBARPQ8N350 705 aaPredicted RBP14.21□□□□□ -0.13
CUX1-215ENST00000556210 LCN9Q8WX39 176 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 FATE1Q969F0 183 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 ARSGQ96EG1 525 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 SYNDIG1Q9H7V2 258 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 TRIM45Q9H8W5 580 aaPredicted RBP14.21□□□□□ -0.13
CUX1-215ENST00000556210 IL1RAPQ9NPH3 570 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 NECTIN3Q9NQS3 549 aa14.21□□□□□ -0.13
CUX1-215ENST00000556210 KCNK5O95279 499 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 ITIH1P19827 911 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 SLC19A1P41440 591 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 OR2B6P58173 313 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 GPNMBQ14956 572 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 TIMM50Q3ZCQ8 353 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 FAM46CQ5VWP2 391 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 OR8K5Q8NH50 307 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 ADAMTS15Q8TE58 950 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 LMLNQ96KR4 655 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 PRR14Q9BWN1 585 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 FAIM2Q9BWQ8 316 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 ITPAQ9BY32 194 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 ANKRA2Q9H9E1 313 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 NEK6Q9HC98 313 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 PHPT1Q9NRX4 125 aaPredicted RBP14.21□□□□□ -0.14
CUX1-215ENST00000556210 IRAK3Q9Y616 596 aa14.21□□□□□ -0.14
CUX1-215ENST00000556210 BRWD1Q9NSI6 2320 aa14.2□□□□□ -0.14
CUX1-215ENST00000556210 ANTXRLA6NF34 631 aa14.2□□□□□ -0.14
CUX1-215ENST00000556210 MID1O15344 667 aa14.2□□□□□ -0.14
CUX1-215ENST00000556210 RPLP0P05388 317 aaKnown RBP14.2□□□□□ -0.14
CUX1-215ENST00000556210 SOX9P48436 509 aa14.2□□□□□ -0.14
CUX1-215ENST00000556210 CENPAP49450 140 aa14.2□□□□□ -0.14
CUX1-215ENST00000556210 OXA1LQ15070 435 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms