RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 FAM220BPB1ANY3 271 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 NPIPA7E9PJI5 369 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 BTN3A3O00478 584 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 CDC123O75794 336 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 AP2A2O94973 939 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 RB1P06400 928 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 STSP08842 583 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 HNRNPA1P09651 372 aaKnown RBP eCLIP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 NPIPA8P0DM63 369 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 HOXB2P14652 356 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 CCNA2P20248 432 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 KELP23276 732 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 PSMA3P25788 255 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 DDX6P26196 483 aaKnown RBP eCLIP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 ACSL1P33121 698 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 TRPC1P48995 793 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 NCBP2P52298 156 aaKnown RBP eCLIP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 PTPN5P54829 565 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 ERVK-21P61565 698 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 NAA20P61599 178 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 SNRPNP63162 240 aaKnown RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 SPCS2Q15005 226 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 GPR19Q15760 415 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 CLEC12AQ5QGZ9 265 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 TMEM126BQ8IUX1 230 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 ETFBKMTQ8IXQ9 262 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 GHDCQ8N2G8 530 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 TMCO5AQ8N6Q1 288 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 ZFP90Q8TF47 636 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 GIPC3Q8TF64 312 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 CHTF18Q8WVB6 975 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 SLC9A6Q92581 669 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 TP53INP1Q96A56 240 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 PDXPQ96GD0 296 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 FUNDC2Q9BWH2 189 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 EPB41L1Q9H4G0 881 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 FGF22Q9HCT0 170 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 GPR83Q9NYM4 423 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 TMEFF2Q9UIK5 374 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 NTNG1Q9Y2I2 539 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 GNB5O14775 395 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 RNGTTO60942 597 aaKnown RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 DNAJB6O75190 326 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 NDUFS2O75306 463 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 NADKO95544 446 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 SRPRAP08240 638 aaKnown RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 ACADMP11310 421 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 CRHBPP24387 322 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 MAOBP27338 520 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 CERS1P27544 350 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 HTR1BP28222 390 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 TPP2P29144 1249 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 MAGEA10P43363 369 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 ASMTP46597 345 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 ALDH3B2P48448 385 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 EPHA5P54756 1037 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 BTN3A2P78410 334 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 SIM1P81133 766 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 PPP2R2BQ00005 443 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 MAP4K2Q12851 820 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 SP140Q13342 867 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 LTB4RQ15722 352 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 ANXA8L1Q5VT79 327 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 FAM46CQ5VWP2 391 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 SDE2Q6IQ49 451 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 B3GLCTQ6Y288 498 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 SHFQ7M4L6 423 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 C6orf120Q7Z4R8 191 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 BTLAQ7Z6A9 289 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 B3GNT8Q7Z7M8 397 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 ADCK1Q86TW2 530 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 HIPK1Q86Z02 1210 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 ADGRF3Q8IZF5 1079 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 STX19Q8N4C7 294 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 FBXL6Q8N531 539 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 FAM160A2Q8N612 972 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 PACRGLQ8N7B6 248 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 LINC01555Q8NAE3 123 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 AQP11Q8NBQ7 271 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 WFIKKN2Q8TEU8 576 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 LCN9Q8WX39 176 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 LZICQ8WZA0 190 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 SIPA1Q96FS4 1042 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 TMEM19Q96HH6 336 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 CHCHD6Q9BRQ6 235 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 EFCAB11Q9BUY7 163 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 SLC17A9Q9BYT1 436 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 C6orf62Q9GZU0 229 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 MCOLN1Q9GZU1 580 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 TRIT1Q9H3H1 467 aaKnown RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 C6orf106Q9H6K1 298 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF556Q9HAH1 456 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 PHPT1Q9NRX4 125 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 SPATA6Q9NWH7 488 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 FAM120CQ9NX05 1096 aaKnown RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 TAS2R9Q9NYW1 312 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 DNAJC27Q9NZQ0 273 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 TAAR2Q9P1P5 351 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 ZFR2Q9UPR6 939 aaKnown RBP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms