RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 LRIT3Q3SXY7 679 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 GALNT5Q7Z7M9 940 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 MRPL41Q8IXM3 137 aaKnown RBP7.53□□□□□ -1.2
VPS13D-211ENST00000543710 HS3ST5Q8IZT8 346 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 VANGL1Q8TAA9 524 aaPredicted RBP7.53□□□□□ -1.2
VPS13D-211ENST00000543710 FANK1Q8TC84 345 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 ELP5Q8TE02 316 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 SLC35F5Q8WV83 523 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 EXOC2Q96KP1 924 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 ZSWIM3Q96MP5 696 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 MINDY3Q9H8M7 445 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 RNF121Q9H920 327 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 MLXQ9UH92 298 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 OR51F1A6NGY5 319 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 FAM25EA8MYX2 175 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 PRR33A8MZF0 331 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 SCDO00767 359 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 MUSKO15146 869 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 TMEM127O75204 238 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 SLC15A1P46059 708 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 HSPA7P48741 367 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 CDH15P55291 814 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 LILRA4P59901 499 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 MCCD1P59942 119 aaPredicted RBP7.53□□□□□ -1.2
VPS13D-211ENST00000543710 RPS15AP62244 130 aaKnown RBP7.53□□□□□ -1.2
VPS13D-211ENST00000543710 ST3GAL2Q16842 350 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 ACSBG2Q5FVE4 666 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 RAB41Q5JT25 222 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 SLC22A10Q63ZE4 541 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 DAW1Q8N136 415 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 GDPD1Q8N9F7 314 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 WDR92Q96MX6 357 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 SAP130Q9H0E3 1048 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 GAREM1Q9H706 876 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 TRPV4Q9HBA0 871 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 COL20A1Q9P218 1284 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 IKZF2Q9UKS7 526 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 PLCL2Q9UPR0 1127 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 BACE2Q9Y5Z0 518 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 COL22A1Q8NFW1 1626 aaPredicted RBP7.53□□□□□ -1.2
VPS13D-211ENST00000543710 LAMB2P55268 1798 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 GRXCR1A8MXD5 290 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 B4GALT5O43286 388 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 SNNO75324 88 aaPredicted RBP7.52□□□□□ -1.2
VPS13D-211ENST00000543710 IL7P13232 177 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 C6P13671 934 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 CD46P15529 392 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 FDXRP22570 491 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 FNTBP49356 437 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 HLCSP50747 726 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 CLDN10P78369 228 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 TLE3Q04726 772 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 NAE1Q13564 534 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 CCNIQ14094 377 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 EEF1DP3Q658K8 133 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 GTF2IRD2BQ6EKJ0 949 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 REEP3Q6NUK4 255 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 GTF2IRD2Q86UP8 949 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 RERGLQ9H628 205 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 WDR55Q9H6Y2 383 aaPredicted RBP7.52□□□□□ -1.2
VPS13D-211ENST00000543710 CD93Q9NPY3 652 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 TIGARQ9NQ88 270 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 MED31Q9Y3C7 131 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 TOGARAM1Q9Y4F4 1720 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 MAU2Q9Y6X3 613 aa7.52□□□□□ -1.2
VPS13D-211ENST00000543710 MYH13Q9UKX3 1938 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 A0A0G2JPF8 293 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 A8MU76 341 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 A8MUI8 341 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 WASH4PA8MWX3 477 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 HNRNPCL3B7ZW38 293 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 PRAMEF26H0Y7S4 382 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 CLIC1O00299 241 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 LDB2O43679 373 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 PRKD3O94806 890 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 HLA-DQB2P05538 268 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 HNRNPCL4P0DMR1 293 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 ITPKAP23677 461 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 CXCR1P25024 350 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 GLP1RP43220 463 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 MAGEA6P43360 314 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 MAZP56270 477 aaKnown RBP7.52□□□□□ -1.21
VPS13D-211ENST00000543710 NADK2Q4G0N4 442 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 KIAA1161Q6NSJ0 714 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 C1orf210Q8IVY1 113 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 RPLP0P6Q8NHW5 317 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 C1orf216Q8TAB5 229 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 BIRC7Q96CA5 298 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 ISOC1Q96CN7 298 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 ORAI3Q9BRQ5 295 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 DOHHQ9BU89 302 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 RDH14Q9HBH5 336 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 Q9N2J8 555 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 EIF3KQ9UBQ5 218 aaKnown RBP7.52□□□□□ -1.21
VPS13D-211ENST00000543710 PGAP2Q9UHJ9 254 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 MUTYHQ9UIF7 546 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 BTNL2Q9UIR0 455 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 PRELID1Q9Y255 219 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.52□□□□□ -1.21
VPS13D-211ENST00000543710 NPIPA5E9PKD4 350 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms