RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SLC22A11	Q9NSA0	550 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	MS4A12	Q9NXJ0	267 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	CTSF	Q9UBX1	484 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	PHF11	Q9UIL8	331 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	G3BP2	Q9UN86	482 aa	Known RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	FARSA	Q9Y285	508 aa	Known RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	MRPS33	Q9Y291	106 aa	Known RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	PADI2	Q9Y2J8	665 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	TMED5	Q9Y3A6	229 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	PTRH2	Q9Y3E5	179 aa	Known RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	PCM1	Q15154	2024 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	LOC101059948	A0A1B0GTJ6	334 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	CLDN4	O14493	209 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ZNF195	O14628	629 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	JRK	O75564	520 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	CDC123	O75794	336 aa	Predicted RBP	9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	SCEL	O95171	688 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ONECUT2	O95948	504 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ALB	P02768	609 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	HEXB	P07686	556 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	FH	P07954	510 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ZGLP1	P0C6A0	271 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	IL10	P22301	178 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	JAK1	P23458	1154 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	BUD31	P41223	144 aa	Predicted RBP	9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	STAT5A	P42229	794 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ALDH9A1	P49189	494 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ARFIP2	P53365	341 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	TAS2R50	P59544	299 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	RAE1	P78406	368 aa	Known RBP	9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	EMX2	Q04743	252 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	C2orf80	Q0P641	193 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	DNASE1L3	Q13609	305 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	NCF4	Q15080	339 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	GALNT18	Q6P9A2	607 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	FAM198B	Q6UWH4	519 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	COX15	Q7KZN9	410 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	SPATA19	Q7Z5L4	167 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ENDOV	Q8N8Q3	282 aa	Known RBP	9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ZNF248	Q8NDW4	579 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	CEP70	Q8NHQ1	597 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	STT3B	Q8TCJ2	826 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ACTRT2	Q8TDY3	377 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ADAMTS18	Q8TE60	1221 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	C16orf78	Q8WTQ4	265 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	KCNE4	Q8WWG9	221 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	FKBP10	Q96AY3	582 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	TSSK3	Q96PN8	268 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	OR52B2	Q96RD2	323 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ELAC2	Q9BQ52	826 aa	Known RBP	9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	EBF4	Q9BQW3	602 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	SIKE1	Q9BRV8	207 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ZNF717	Q9BY31	904 aa	Predicted RBP	9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	TCF7L2	Q9NQB0	619 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	BAIAP2L1	Q9UHR4	511 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ADAM21	Q9UKJ8	722 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	NXT1	Q9UKK6	140 aa	Known RBP	9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ACSL6	Q9UKU0	697 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	MKL2	Q9ULH7	1088 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	DAPP1	Q9UN19	280 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	DLGAP4	Q9Y2H0	992 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ATG4B	Q9Y4P1	393 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	ASB4	Q9Y574	426 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	SPTBN4	Q9H254	2564 aa		9.59	□□□□□ -0.87
CPSF7-221	ENST00000543545	SPEG	Q15772	3267 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545		A0A1W2PR48	441 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	GLOD5	A6NK44	160 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	C21orf140	B9A014	251 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545		E9PBE3	544 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	NPIPB8	E9PQR5	432 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	UBD	O15205	165 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	KLK10	O43240	276 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	PROM1	O43490	865 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	AKAP10	O43572	662 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	KLHL41	O60662	606 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	BMP10	O95393	424 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	AIFM1	O95831	613 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	IL3	P08700	152 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	RAB40AL	P0C0E4	278 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	NR2F6	P10588	404 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	G6PD	P11413	515 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	PRPS2	P11908	318 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	BCKDHA	P12694	445 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	ALOX15	P16050	662 aa	Predicted RBP	9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	FOLR3	P41439	243 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	EMP2	P54851	167 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	HNRNPH2	P55795	449 aa	Known RBP	9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	FOXL2	P58012	376 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	TRA2B	P62995	288 aa	Known RBP	9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	ERVK-8	P63133	956 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	ACTN3	Q08043	901 aa	Predicted RBP	9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	ZNF763	Q0D2J5	394 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	SLC13A2	Q13183	592 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	KIAA0040	Q15053	153 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	NKG7	Q16617	165 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	SMU1	Q2TAY7	513 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	LSM12	Q3MHD2	195 aa	Known RBP	9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	C18orf63	Q68DL7	685 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	MRM1	Q6IN84	353 aa	Known RBP	9.58	□□□□□ -0.88

Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms