RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SERPINB9P50453 376 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 TAS2R39P59534 338 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 RAB10P61026 200 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 RPP30P78346 268 aaKnown RBP4.9□□□□□ -1.63
CLIP1-217ENST00000543205 TIAL1Q01085 375 aaKnown RBP eCLIP4.9□□□□□ -1.63
CLIP1-217ENST00000543205 PRKAA1Q13131 559 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 LAPTM5Q13571 262 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 N4BP2L1Q5TBK1 243 aaPredicted RBP4.9□□□□□ -1.63
CLIP1-217ENST00000543205 MROH9Q5TGP6 573 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 ZCCHC12Q6PEW1 402 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 RBM44Q6ZP01 1051 aaKnown RBP4.9□□□□□ -1.63
CLIP1-217ENST00000543205 DCUN1D3Q8IWE4 304 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 RAB42Q8N4Z0 105 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 OR4E2Q8NGC2 313 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 OR52E1Q8NGJ3 308 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 AENQ8WTP8 325 aaKnown RBP4.9□□□□□ -1.63
CLIP1-217ENST00000543205 EEF1AKMT1Q8WVE0 214 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 SLC44A1Q8WWI5 657 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 LCN9Q8WX39 176 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 CAVIN3Q969G5 261 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 FOXRED1Q96CU9 486 aaPredicted RBP4.9□□□□□ -1.63
CLIP1-217ENST00000543205 FER1L6-AS2Q96M78 137 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 CITED2Q99967 270 aaPredicted RBP4.9□□□□□ -1.63
CLIP1-217ENST00000543205 DPYSL5Q9BPU6 564 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 G6PC3Q9BUM1 346 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 TBC1D10AQ9BXI6 508 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 SRMSQ9H3Y6 488 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 POPDC3Q9HBV1 291 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 FETUBQ9UGM5 382 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 RAB21Q9UL25 225 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 NFS1Q9Y697 457 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 MAST4O15021 2626 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 IQANK1A0A1B0GTG1 560 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 hCG_1809904A0A1W2PP81 198 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 A0A1W2PPE2 198 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 A0A1W2PQM1 296 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 A0A1W2PR64 198 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 OR6C74A6NCV1 312 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 FAM90A27PA6NNH2 459 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 BTN3A1O00481 513 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 NTN3O00634 580 aaPredicted RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 PSIP1O75475 530 aaKnown RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 C1orf105O95561 183 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CPNE6O95741 557 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 SYF2O95926 243 aaKnown RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 MT-CO3P00414 261 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CATP04040 527 aaKnown RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 TPOP07202 933 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 C8GP07360 202 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 HEXBP07686 556 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 HIST1H2AGP0C0S8 130 aaPredicted RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 TMIGD3P0DMS9 266 aaPredicted RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 ZNF37AP17032 561 aaPredicted RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 HIST1H2ADP20671 130 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CYP2A7P20853 494 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CD1CP29017 333 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CRABP2P29373 138 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 TYK2P29597 1187 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 SHMT2P34897 504 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 SERPINB8P50452 374 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 PGGT1BP53609 377 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 IFFO1Q0D2I5 559 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 MGAT2Q10469 447 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 BMPR2Q13873 1038 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CLPPQ16740 277 aaPredicted RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 HES3Q5TGS1 186 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 WDR74Q6RFH5 385 aaPredicted RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CYHR1Q6ZMK1 362 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 PIWIL4Q7Z3Z4 852 aaKnown RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 AMIGO1Q86WK6 493 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 OOSP2Q86WS3 158 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 TMPRSS12Q86WS5 348 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 PLXDC1Q8IUK5 500 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 ANKS4BQ8N8V4 417 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 OR56A3Q8NH54 315 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 MCOLN3Q8TDD5 553 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 DCAKDQ8WVC6 231 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 ANKRD49Q8WVL7 239 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 ADAMTS14Q8WXS8 1223 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 RAD51AP1Q96B01 352 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 ZDHHC12Q96GR4 267 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 HIST1H2AHQ96KK5 128 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 HIST1H2AJQ99878 128 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 H2AFJQ9BTM1 129 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 RAB11FIP5Q9BXF6 653 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 PCDHAC1Q9H158 963 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 C1orf21Q9H246 121 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 EPB41L4BQ9H329 900 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 TFB2MQ9H5Q4 396 aaKnown RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 XKR8Q9H6D3 395 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 RDH14Q9HBH5 336 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 G6PC2Q9NQR9 355 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 SELENONQ9NZV5 590 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 ACTR3BQ9P1U1 418 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 TNFRSF10DQ9UBN6 386 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 LNPEPQ9UIQ6 1025 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 TLK1Q9UKI8 766 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 PLAGL1Q9UM63 463 aa4.89□□□□□ -1.63
CLIP1-217ENST00000543205 RUVBL2Q9Y230 463 aaKnown RBP4.89□□□□□ -1.63
CLIP1-217ENST00000543205 CCL27Q9Y4X3 112 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms