RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 TEX9Q8N6V9 391 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 FAM47BQ8NA70 645 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 MDS2Q8NDY4 140 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 NFAM1Q8NET5 270 aaPredicted RBP10.82□□□□□ -0.68
RTN3-209ENST00000538995 B3GNT7Q8NFL0 401 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 DNAJB8Q8NHS0 232 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 NR4A3Q92570 626 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 REPS1Q96D71 796 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 TRIM44Q96DX7 344 aaPredicted RBP10.82□□□□□ -0.68
RTN3-209ENST00000538995 F2RL3Q96RI0 385 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 TAAR6Q96RI8 345 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 NPAS2Q99743 824 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 UTP23Q9BRU9 249 aaKnown RBP10.82□□□□□ -0.68
RTN3-209ENST00000538995 CENPKQ9BS16 269 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 VPS11Q9H270 941 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 ADAP2Q9NPF8 381 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 PRDM7Q9NQW5 492 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 SLC5A6Q9Y289 635 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 PCDHGA11Q9Y5H2 935 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 CLDN16Q9Y5I7 305 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 SPACA6W5XKT8 324 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 GABRR3A8MPY1 467 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 H0YIV9 168 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 STX16-NPEPL1H3BU86 382 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 STX16O14662 325 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 MYO1DO94832 1006 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 F10P00742 488 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 PCNAP12004 261 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 HIST1H1TP22492 207 aaPredicted RBP10.81□□□□□ -0.68
RTN3-209ENST00000538995 ATP5A1P25705 553 aaKnown RBP10.81□□□□□ -0.68
RTN3-209ENST00000538995 TRHRP34981 398 aaPredicted RBP10.81□□□□□ -0.68
RTN3-209ENST00000538995 SSR2P43308 183 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 CLCN2P51788 898 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 TDGF1P3P51864 188 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 SLC13A2Q13183 592 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 GTF2H2Q13888 395 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 SERTAD2Q14140 314 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 OR1C1Q15619 314 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 ELAVL1Q15717 326 aaKnown RBP10.81□□□□□ -0.68
RTN3-209ENST00000538995 AP5B1Q2VPB7 878 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 ZNF766Q5HY98 468 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 C10orf62Q5T681 223 aaPredicted RBP10.81□□□□□ -0.68
RTN3-209ENST00000538995 LGSNQ5TDP6 509 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 GTF2H2CQ6P1K8 395 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 ZNF793Q6ZN11 406 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 TRMT10CQ7L0Y3 403 aaKnown RBP10.81□□□□□ -0.68
RTN3-209ENST00000538995 GOLGA7Q7Z5G4 137 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 UBE3DQ7Z6J8 389 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 RPS19BP1Q86WX3 136 aaKnown RBP10.81□□□□□ -0.68
RTN3-209ENST00000538995 KIF2BQ8N4N8 673 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 AMER2Q8N7J2 671 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 ACOT4Q8N9L9 421 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 L3MBTL4Q8NA19 623 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 TMEM178AQ8NBL3 297 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 APCDD1LQ8NCL9 501 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 HUS1BQ8NHY5 278 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 DCAKDQ8WVC6 231 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 SCMH1Q96GD3 660 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 C5orf34Q96MH7 638 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 TRIM45Q9H8W5 580 aaPredicted RBP10.81□□□□□ -0.68
RTN3-209ENST00000538995 ACTR8Q9H981 624 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 DMRT3Q9NQL9 472 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 KCMF1Q9P0J7 381 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 CPSF2Q9P2I0 782 aaKnown RBP10.81□□□□□ -0.68
RTN3-209ENST00000538995 XPR1Q9UBH6 696 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 PPT2Q9UMR5 302 aa10.81□□□□□ -0.68
RTN3-209ENST00000538995 EXOC1LA0A1B0GW35 172 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 WIPF3A6NGB9 483 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 TRIM49D1C9J1S8 452 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 FCHO1O14526 889 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 CTNSO60931 367 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 SMIM24O75264 130 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 LDLRP01130 860 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 SNRPAP09012 282 aaKnown RBP10.8□□□□□ -0.68
RTN3-209ENST00000538995 CD46P15529 392 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 CD96P40200 585 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 RAP1GDS1P52306 607 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 HNRNPFP52597 415 aaKnown RBP10.8□□□□□ -0.68
RTN3-209ENST00000538995 MLF1P58340 268 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 C4orf17Q53FE4 359 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 DEPDC1Q5TB30 811 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 LCA5Q86VQ0 697 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 MYLK4Q86YV6 388 aaPredicted RBP10.8□□□□□ -0.68
RTN3-209ENST00000538995 PLD6Q8N2A8 252 aaKnown RBP10.8□□□□□ -0.68
RTN3-209ENST00000538995 TMEM132CQ8N3T6 1108 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 ZCCHC7Q8N3Z6 543 aaKnown RBP10.8□□□□□ -0.68
RTN3-209ENST00000538995 PTGR2Q8N8N7 351 aaPredicted RBP10.8□□□□□ -0.68
RTN3-209ENST00000538995 TMEM52Q8NDY8 209 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 DAZLQ92904 295 aaKnown RBP10.8□□□□□ -0.68
RTN3-209ENST00000538995 RGMAQ96B86 450 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 MTBPQ96DY7 904 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 VMP1Q96GC9 406 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 CSF3RQ99062 836 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 MRPL57Q9BQC6 102 aaKnown RBP10.8□□□□□ -0.68
RTN3-209ENST00000538995 DEFB126Q9BYW3 111 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 MRPL46Q9H2W6 279 aaKnown RBP10.8□□□□□ -0.68
RTN3-209ENST00000538995 CDCP1Q9H5V8 836 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 IPPKQ9H8X2 491 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 PRM3Q9NNZ6 103 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 PNO1Q9NRX1 252 aaKnown RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms