RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 HNRNPA1P09651 372 aaKnown RBP eCLIP12.57□□□□□ -0.4
LDLR-203ENST00000535915 GRK3P35626 688 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 TGFBR1P36897 503 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 VIPR2P41587 438 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 NUDT6P53370 316 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 EEF1A2Q05639 463 aaKnown RBP12.57□□□□□ -0.4
LDLR-203ENST00000535915 GANABQ14697 944 aaKnown RBP12.57□□□□□ -0.4
LDLR-203ENST00000535915 TRIM16LQ309B1 348 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 HNRNPA1L2Q32P51 320 aaKnown RBP12.57□□□□□ -0.4
LDLR-203ENST00000535915 CRB2Q5IJ48 1285 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 LINC00299Q6ZSB3 139 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 CCDC103Q8IW40 242 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 KRT78Q8N1N4 520 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 TMIEQ8NEW7 156 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 RHOXF1Q8NHV9 184 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 SPPL3Q8TCT6 385 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 MYDGFQ969H8 173 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 RAD51AP1Q96B01 352 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 ZHX1-C8orf76Q96EF9 292 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 ZFYVE19Q96K21 471 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 DYRK4Q9NR20 520 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 CXXC1Q9P0U4 656 aaPredicted RBP12.57□□□□□ -0.4
LDLR-203ENST00000535915 TAAR2Q9P1P5 351 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 GPR34Q9UPC5 381 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 PCDHGA2Q9Y5H1 932 aa12.57□□□□□ -0.4
LDLR-203ENST00000535915 GOLGA4Q13439 2230 aaKnown RBP12.56□□□□□ -0.4
LDLR-203ENST00000535915 TRPM6Q9BX84 2022 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 DOCK9Q9BZ29 2069 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 EDDM13A0A1B0GTR0 161 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 CLDN24A6NM45 220 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 KPNA4O00629 521 aaPredicted RBP12.56□□□□□ -0.4
LDLR-203ENST00000535915 HOXC11O43248 304 aaPredicted RBP12.56□□□□□ -0.4
LDLR-203ENST00000535915 ADAM23O75077 832 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 SLC19A1P41440 591 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 CLK1P49759 484 aaKnown RBP12.56□□□□□ -0.4
LDLR-203ENST00000535915 BCAP31P51572 246 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 DPTQ07507 201 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 INAQ16352 499 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 VN1R5Q7Z5H4 357 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 ZNF605Q86T29 641 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 DNAJC22Q8N4W6 341 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 FCGR1BQ92637 280 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 RSPRY1Q96DX4 576 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 NLNQ9BYT8 704 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 ARMC7Q9H6L4 198 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 PCYT1BQ9Y5K3 369 aaPredicted RBP12.56□□□□□ -0.4
LDLR-203ENST00000535915 CLCA1A8K7I4 914 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 PCDH17O14917 1159 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 FGBP02675 491 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 ARAFP10398 606 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 LIPAP38571 399 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 PXNP49023 591 aaPredicted RBP12.56□□□□□ -0.4
LDLR-203ENST00000535915 EIF2B2P49770 351 aaKnown RBP12.56□□□□□ -0.4
LDLR-203ENST00000535915 DSTNP60981 165 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 CYP4F2P78329 520 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 ELAVL3Q14576 367 aaKnown RBP12.56□□□□□ -0.4
LDLR-203ENST00000535915 CYP2A13Q16696 494 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 PERM1Q5SV97 790 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 ZNF362Q5T0B9 420 aaPredicted RBP12.56□□□□□ -0.4
LDLR-203ENST00000535915 THOC7Q6I9Y2 204 aaKnown RBP12.56□□□□□ -0.4
LDLR-203ENST00000535915 NIPAL1Q6NVV3 410 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 LCTLQ6UWM7 567 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 UNC5DQ6UXZ4 953 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 IKBIPQ70UQ0 350 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 SLC9B2Q86UD5 537 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 ARMC8Q8IUR7 673 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 GGHQ92820 318 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 SLC38A4Q969I6 547 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 GTPBP3Q969Y2 492 aaKnown RBP12.56□□□□□ -0.4
LDLR-203ENST00000535915 PPP1R16AQ96I34 528 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 PIP5K1AQ99755 562 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 OR52A5Q9H2C5 316 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 FBXO8Q9NRD0 319 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 PLCXD1Q9NUJ7 323 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 ACER3Q9NUN7 267 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 TRNAU1APQ9NX07 287 aaKnown RBP12.56□□□□□ -0.4
LDLR-203ENST00000535915 IMPAD1Q9NX62 359 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 AHSPQ9NZD4 102 aa12.56□□□□□ -0.4
LDLR-203ENST00000535915 TRBC2A0A5B9 178 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 ANKDD1BA6NHY2 528 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 VEGFDO43915 354 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 GADD45GO95257 159 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 UQCRC2P22695 453 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 KELP23276 732 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 XCR1P46094 333 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 C11orf96Q7Z7L8 435 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 SNX29P2Q8IUI4 249 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 DEPDC4Q8N2C3 294 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 OR6Q1Q8NGQ2 317 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 PHF10Q8WUB8 498 aaKnown RBP12.55□□□□□ -0.4
LDLR-203ENST00000535915 ALPK1Q96QP1 1244 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 NRTNQ99748 197 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 CXorf36Q9H7Y0 433 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 GPR83Q9NYM4 423 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 RHCGQ9UBD6 479 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 TAC3Q9UHF0 121 aa12.55□□□□□ -0.4
LDLR-203ENST00000535915 CFAP20Q9Y6A4 193 aaKnown RBP12.55□□□□□ -0.4
LDLR-203ENST00000535915 MUC22E2RYF6 1773 aaPredicted RBP12.55□□□□□ -0.4
LDLR-203ENST00000535915 RTCAO00442 366 aaKnown RBP12.55□□□□□ -0.4
LDLR-203ENST00000535915 AIREO43918 545 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms