RNA–Protein interactions for RNA: ENST00000533897.1

CTSC-208, Transcript of cathepsin C, human

TSL 2

Gene CTSC, Length 4,344 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSC-208	ENST00000533897	LINC00615	Q96LM1	132 aa	Predicted RBP	4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	COPS8	Q99627	209 aa		4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	GPA33	Q99795	319 aa		4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	MAPKAP1	Q9BPZ7	522 aa		4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	TM6SF2	Q9BZW4	377 aa		4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	SUV39H2	Q9H5I1	410 aa		4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	ELOVL6	Q9H5J4	265 aa		4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	REEP4	Q9H6H4	257 aa		4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	PPP1R3E	Q9H7J1	279 aa		4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	DMRT3	Q9NQL9	472 aa		4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	CLEC2D	Q9UHP7	191 aa		4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	TSR3	Q9UJK0	312 aa	Known RBP	4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	A4GNT	Q9UNA3	340 aa		4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	CHST2	Q9Y4C5	530 aa		4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	PEX16	Q9Y5Y5	336 aa		4.22	□□□□□ -1.73
CTSC-208	ENST00000533897	TRBV4-1	A0A0J9YWV2	114 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	TNFRSF11B	O00300	401 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	STK25	O00506	426 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	ZW10	O43264	779 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	SUV39H1	O43463	412 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	C1orf105	O95561	183 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	SOD2	P04179	222 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	SRPRA	P08240	638 aa	Known RBP	4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	RHCE	P18577	417 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	ELAVL4	P26378	380 aa	Known RBP	4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	MNX1	P50219	401 aa	Predicted RBP	4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	CHRNE	Q04844	493 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	MEDAG	Q5VYS4	303 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	LILRA6	Q6PI73	481 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	VASH1	Q7L8A9	365 aa	Predicted RBP	4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	ZNF547	Q8IVP9	402 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	FAM26E	Q8N5C1	309 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	TRAM1L1	Q8N609	369 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	WDR48	Q8TAF3	677 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	NEURL3	Q96EH8	262 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	COQ10A	Q96MF6	247 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	RHBG	Q9H310	441 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	NMNAT1	Q9HAN9	279 aa	Predicted RBP	4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	ISYNA1	Q9NPH2	558 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	STARD7	Q9NQZ5	370 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	B4GALT6	Q9UBX8	382 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	GRIP1	Q9Y3R0	1128 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	ORC6	Q9Y5N6	252 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	ANKRD34B	A5PLL1	514 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	SLC16A8	O95907	504 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	IGFBP1	P08833	259 aa	Predicted RBP	4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	DBT	P11182	482 aa	Known RBP	4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	ITPKA	P23677	461 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	RPS5	P46782	204 aa	Known RBP	4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	CTSC	P53634	463 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	EPHA5	P54756	1037 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	ACSM1	Q08AH1	577 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	NCF4	Q15080	339 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	CDK10	Q15131	360 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	NDUFA5	Q16718	116 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	IFI44L	Q53G44	452 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	EXOSC6	Q5RKV6	272 aa	Known RBP	4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	MFSD4B	Q5TF39	518 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	ANXA8L1	Q5VT79	327 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	PGBD2	Q6P3X8	592 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	AGTRAP	Q6RW13	159 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	UNC5D	Q6UXZ4	953 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	COMMD6	Q7Z4G1	85 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	NRARP	Q7Z6K4	114 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	KIF18B	Q86Y91	864 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	SYT12	Q8IV01	421 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	PHC2	Q8IXK0	858 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	MMP21	Q8N119	569 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	LGI4	Q8N135	537 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	SLC39A11	Q8N1S5	342 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	CHST14	Q8NCH0	376 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	C11orf65	Q8NCR3	313 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	FLCN	Q8NFG4	579 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	KBTBD8	Q8NFY9	601 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	LILRB4	Q8NHJ6	448 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	C16orf78	Q8WTQ4	265 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	ZNF480	Q8WV37	535 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	FAM129B	Q96TA1	746 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	MGLL	Q99685	303 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	EGFL8	Q99944	293 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	C2orf49	Q9BVC5	232 aa	Predicted RBP	4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	OR2B2	Q9GZK3	357 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	BRD9	Q9H8M2	597 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	SMURF1	Q9HCE7	757 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	ACOXL	Q9NUZ1	547 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	HCN4	Q9Y3Q4	1203 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	SNX11	Q9Y5W9	270 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	TICRR	Q7Z2Z1	1910 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	SHISA3	A0PJX4	238 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	FAM227A	F5H4B4	570 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	LOC110117498-PIK3R3	F6TDL0	507 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	CCRL2	O00421	344 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	PLK4	O00444	970 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	ENTPD6	O75354	484 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	GMNN	O75496	209 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	CSF3	P09919	207 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	COX7A2	P14406	83 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	ZNF30	P17039	623 aa		4.21	□□□□□ -1.74
CTSC-208	ENST00000533897	CD72	P21854	359 aa		4.21	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms