RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SEMA3DO95025 777 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 MLYCDO95822 493 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 ATP5A1P25705 553 aaKnown RBP14.14□□□□□ -0.15
CPSF1-208ENST00000532560 PTX3P26022 381 aaPredicted RBP14.14□□□□□ -0.15
CPSF1-208ENST00000532560 SSR2P43308 183 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 RAP1GDS1P52306 607 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 GYS2P54840 703 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 LIM2P55344 173 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 AP2B1P63010 937 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 LCP2Q13094 533 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 IFT88Q13099 833 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 CUL3Q13618 768 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 RAPSNQ13702 412 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 NSDHLQ15738 373 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 AP5B1Q2VPB7 878 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 RIPOR1Q6ZS17 1223 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 SCUBE1Q8IWY4 988 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 PARP9Q8IXQ6 854 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 KBTBD2Q8IY47 623 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 TRPC4APQ8TEL6 797 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 RGMAQ96B86 450 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 IMMP1LQ96LU5 166 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 MID2Q9UJV3 735 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 ANAPC2Q9UJX6 822 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 ZNF225Q9UK10 706 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 MRPS33Q9Y291 106 aaKnown RBP14.14□□□□□ -0.15
CPSF1-208ENST00000532560 HEMK1Q9Y5R4 338 aaPredicted RBP14.14□□□□□ -0.15
CPSF1-208ENST00000532560 CFAP46Q8IYW2 2715 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 TNRC6AQ8NDV7 1962 aaKnown RBP14.13□□□□□ -0.15
CPSF1-208ENST00000532560 TCRBV16S1A1N1A0A5B0 115 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 FAM227AF5H4B4 570 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 SAP18O00422 153 aaKnown RBP14.13□□□□□ -0.15
CPSF1-208ENST00000532560 CYR61O00622 381 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 PPP6CO00743 305 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 PLPP1O14494 284 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 DPM1O60762 260 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 SH3BGRLO75368 114 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 SERPINA7P05543 415 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 PRR35P0CG20 571 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 ICAM2P13598 275 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 TSPAN8P19075 237 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 NEK2P51955 445 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 HSD17B7P56937 341 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 DNAJB13P59910 316 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 ZNF844Q08AG5 666 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 KLRB1Q12918 225 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 SFT2D3Q587I9 215 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 PLAG1Q6DJT9 500 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 TTC19Q6DKK2 380 aaPredicted RBP14.13□□□□□ -0.15
CPSF1-208ENST00000532560 OR4C11Q6IEV9 310 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 IGFL3Q6UXB1 125 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 PTRH1Q86Y79 214 aaKnown RBP14.13□□□□□ -0.15
CPSF1-208ENST00000532560 SRRM1Q8IYB3 904 aaKnown RBP14.13□□□□□ -0.15
CPSF1-208ENST00000532560 ZCCHC7Q8N3Z6 543 aaKnown RBP14.13□□□□□ -0.15
CPSF1-208ENST00000532560 ACOT4Q8N9L9 421 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 BANPQ8N9N5 519 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 THOC3Q96J01 351 aaKnown RBP14.13□□□□□ -0.15
CPSF1-208ENST00000532560 PTCHD1Q96NR3 888 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 ZIM3Q96PE6 472 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 SERPINI1Q99574 410 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 WDR77Q9BQA1 342 aaPredicted RBP14.13□□□□□ -0.15
CPSF1-208ENST00000532560 ZNF717Q9BY31 904 aaPredicted RBP14.13□□□□□ -0.15
CPSF1-208ENST00000532560 SLC29A3Q9BZD2 475 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 GSTO2Q9H4Y5 243 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 ELOVL6Q9H5J4 265 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 KCMF1Q9P0J7 381 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 DOCK10Q96BY6 2186 aa14.13□□□□□ -0.15
CPSF1-208ENST00000532560 IGHV3-20A0A0C4DH32 117 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 BLACEA4D250 179 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 SYNDIG1LA6NDD5 238 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 SUV39H1O43463 412 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 SEC24DO94855 1032 aaPredicted RBP14.12□□□□□ -0.15
CPSF1-208ENST00000532560 OR4F21O95013 312 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 ETHE1O95571 254 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 CPA3P15088 417 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 MAOAP21397 527 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 PKNOX1P55347 436 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 OR4D2P58180 307 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 BTG2P78543 158 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 EXT1Q16394 746 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 KRT71Q3SY84 523 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 AGAP7PQ5VUJ5 663 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 JMJD6Q6NYC1 403 aaPredicted RBP14.12□□□□□ -0.15
CPSF1-208ENST00000532560 GPRIN3Q6ZVF9 776 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 ZNF595Q8IYB9 648 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 CCDC63Q8NA47 563 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 FAM47BQ8NA70 645 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 ARMC2Q8NEN0 867 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 TM9SF4Q92544 642 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 AGAP4Q96P64 663 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 CSF3RQ99062 836 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 LPAR4Q99677 370 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 MAPKAP1Q9BPZ7 522 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 IQCGQ9H095 443 aaKnown RBP14.12□□□□□ -0.15
CPSF1-208ENST00000532560 C12orf65Q9H3J6 166 aaKnown RBP14.12□□□□□ -0.15
CPSF1-208ENST00000532560 SENP1Q9P0U3 644 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 SNX6Q9UNH7 406 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 PLLPQ9Y342 182 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 CLDN16Q9Y5I7 305 aa14.12□□□□□ -0.15
CPSF1-208ENST00000532560 SPACA6W5XKT8 324 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms