RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 DDIASQ8IXT1 998 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 FAM9CQ8IZT9 166 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 DCBLD1Q8N8Z6 715 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 C19orf47Q8N9M1 422 aaKnown RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 OR8K5Q8NH50 307 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 RFWD2Q8NHY2 731 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 CHTF18Q8WVB6 975 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 RGMAQ96B86 450 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 TUBGCP3Q96CW5 907 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 C11orf24Q96F05 449 aaPredicted RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 SMIM10Q96HG1 83 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 CCDC74BQ96LY2 380 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 C3orf30Q96M34 536 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 PPM1MQ96MI6 270 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 RILPQ96NA2 401 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 MTERF1Q99551 399 aaKnown RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 NUDT22Q9BRQ3 303 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 CENPKQ9BS16 269 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 NLNQ9BYT8 704 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 SPNS1Q9H2V7 528 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 ZNF768Q9H5H4 540 aaKnown RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 CLK4Q9HAZ1 481 aaKnown RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 FAM60AQ9NP50 221 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 TCF7L2Q9NQB0 619 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 FARSBQ9NSD9 589 aaKnown RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 TMEM45AQ9NWC5 275 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 MARCOQ9UEW3 520 aaPredicted RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 KLHL20Q9Y2M5 609 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 WBP11Q9Y2W2 641 aaKnown RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 ARL2BPQ9Y2Y0 163 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 TMED5Q9Y3A6 229 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 FIS1Q9Y3D6 152 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 SLC22A7Q9Y694 548 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 FREM2Q5SZK8 3169 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 IGF2RP11717 2491 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 KNTC1P50748 2209 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 DSPP15924 2871 aaKnown RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 LOC105369274A0A096LPK9 316 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 A0A0G2JND7 137 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 LOC102723532A0A0G2JNH3 316 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 A0A0J9YVX5 310 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 ATP6AP2A0A1C7CYW4 349 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 FITM1A5D6W6 292 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 A8MU76 341 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 SDHDO14521 159 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 NDUFAB1O14561 156 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 LSM1O15116 133 aaKnown RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 CCDC22O60826 627 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 RFPL3O75679 317 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 ATP6AP2O75787 350 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 UBOX5O94941 541 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 SEMA3DO95025 777 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 TBX6O95947 436 aaPredicted RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 JUNP05412 331 aaKnown RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 SLC35G6P0C7Q6 338 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 PRR35P0CG20 571 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 THRAP10827 490 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 FOSL1P15407 271 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 EPHA3P29320 983 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 CCKBRP32239 447 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 CSF2RBP32927 897 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 CSTF2P33240 577 aaKnown RBP eCLIP7.03□□□□□ -1.28
CD44-228ENST00000528455 BCL6P41182 706 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 GSTM5P46439 218 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 GIPRP48546 466 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 RPS13P62277 151 aaKnown RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 ACY1Q03154 408 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 RGS1Q08116 209 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 TGM3Q08188 693 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 TBL3Q12788 808 aaKnown RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 FAM53BQ14153 422 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 IL11RAQ14626 422 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 TERF2Q15554 542 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 PDCD2Q16342 344 aaPredicted RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 GSTA3Q16772 222 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 IMPG1Q17R60 797 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 AP5B1Q2VPB7 878 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 LSM12Q3MHD2 195 aaKnown RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 SLC9B1Q4ZJI4 515 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 ATP6AP1LQ52LC2 224 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 RFTN2Q52LD8 501 aaPredicted RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 SPIN4Q56A73 249 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 SPDYAQ5MJ70 313 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 TCHHL1Q5QJ38 904 aaPredicted RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 WASHC2DQ5SRD0 308 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 VWA5B1Q5TIE3 1220 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 YOD1Q5VVQ6 348 aaPredicted RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 GARNL3Q5VVW2 1013 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 OR4C11Q6IEV9 310 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 CYB5D1Q6P9G0 228 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 SCIMPQ6UWF3 145 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 PAGE2Q7Z2X7 111 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 TMPRSS9Q7Z410 1059 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 MAVSQ7Z434 540 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 ASPGQ86U10 573 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 TMPRSS12Q86WS5 348 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 LSRQ86X29 649 aaPredicted RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 PLD3Q8IV08 490 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 OR4N4Q8N0Y3 316 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 OR2L5Q8NG80 312 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms