RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TMBIM1Q969X1 311 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 CNBD2Q96M20 576 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 ASPSCR1Q9BZE9 553 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 DLGAP2Q9P1A6 1054 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 C5AR2Q9P296 337 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 MUTYHQ9UIF7 546 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 FAF1Q9UNN5 650 aaPredicted RBP19.67■□□□□ 0.74
VPS28-209ENST00000528142 ASB4Q9Y574 426 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 FAM221BA6H8Z2 402 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 CST1P01037 141 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 SEMG1P04279 462 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 WNT1P04628 370 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 CTSEP14091 401 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 ZNF23P17027 643 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 MAGP20916 626 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 CRATP43155 626 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 BLKP51451 505 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 CRYBA2P53672 197 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 FADDQ13158 208 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 C1orf61Q13536 156 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 SLC9A5Q14940 896 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 NDUFAF5Q5TEU4 345 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 TMEM214Q6NUQ4 689 aaKnown RBP19.67■□□□□ 0.74
VPS28-209ENST00000528142 EIF3MQ7L2H7 374 aaKnown RBP19.67■□□□□ 0.74
VPS28-209ENST00000528142 GALNT10Q86SR1 603 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 CARM1Q86X55 608 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 DCP2Q8IU60 420 aaKnown RBP19.67■□□□□ 0.74
VPS28-209ENST00000528142 DEFB119Q8N690 84 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 ACOT4Q8N9L9 421 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 C11orf65Q8NCR3 313 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 SRFBP1Q8NEF9 429 aaKnown RBP19.67■□□□□ 0.74
VPS28-209ENST00000528142 OR10Q1Q8NGQ4 319 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 OR8K5Q8NH50 307 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 OR5AK3PQ8NH89 298 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 FCRL4Q96PJ5 515 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 EHD3Q9NZN3 535 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 RAPGEFL1Q9UHV5 662 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 RPS6KA6Q9UK32 745 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 NUP214P35658 2090 aaPredicted RBP19.66■□□□□ 0.74
VPS28-209ENST00000528142 A0A1W2PR77 199 aa19.66■□□□□ 0.74
VPS28-209ENST00000528142 NDUFS2O75306 463 aa19.66■□□□□ 0.74
VPS28-209ENST00000528142 GCM2O75603 506 aaPredicted RBP19.66■□□□□ 0.74
VPS28-209ENST00000528142 TSFMP43897 325 aaKnown RBP19.66■□□□□ 0.74
VPS28-209ENST00000528142 SLAMF1Q13291 335 aa19.66■□□□□ 0.74
VPS28-209ENST00000528142 FCRL6Q6DN72 434 aa19.66■□□□□ 0.74
VPS28-209ENST00000528142 TRIM40Q6P9F5 258 aa19.66■□□□□ 0.74
VPS28-209ENST00000528142 GJD3Q8N144 294 aa19.66■□□□□ 0.74
VPS28-209ENST00000528142 CADM4Q8NFZ8 388 aa19.66■□□□□ 0.74
VPS28-209ENST00000528142 OR10G6Q8NH81 332 aa19.66■□□□□ 0.74
VPS28-209ENST00000528142 NT5CQ8TCD5 201 aa19.66■□□□□ 0.74
VPS28-209ENST00000528142 EXOSC8Q96B26 276 aaKnown RBP19.66■□□□□ 0.74
VPS28-209ENST00000528142 OR2A5Q96R48 311 aa19.66■□□□□ 0.74
VPS28-209ENST00000528142 PCED1AQ9H1Q7 454 aa19.66■□□□□ 0.74
VPS28-209ENST00000528142 KLK4Q9Y5K2 254 aa19.66■□□□□ 0.74
VPS28-209ENST00000528142 ENTPD2Q9Y5L3 495 aa19.66■□□□□ 0.74
VPS28-209ENST00000528142 GSAPA4D1B5 854 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 SMNDC1O75940 238 aaKnown RBP eCLIP19.65■□□□□ 0.74
VPS28-209ENST00000528142 KRT75O95678 551 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 ZNF682O95780 498 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 CHI3L1P36222 383 aaPredicted RBP19.65■□□□□ 0.74
VPS28-209ENST00000528142 MANFP55145 182 aaKnown RBP19.65■□□□□ 0.74
VPS28-209ENST00000528142 CASP9P55211 416 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 STXBP1P61764 594 aaKnown RBP19.65■□□□□ 0.74
VPS28-209ENST00000528142 EEF1A2Q05639 463 aaKnown RBP19.65■□□□□ 0.74
VPS28-209ENST00000528142 VAC14Q08AM6 782 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 RBBP4Q09028 425 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 LARP7Q4G0J3 582 aaKnown RBP eCLIP19.65■□□□□ 0.74
VPS28-209ENST00000528142 GCNT6Q5T4J0 391 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 ANGPTL8Q6UXH0 198 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 RNF130Q86XS8 419 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 SPEM1Q8N4L4 309 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 TM4SF19Q96DZ7 209 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 LRRC61Q9BV99 259 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 FAIM2Q9BWQ8 316 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 TMEM121BQ9BXQ6 578 aaPredicted RBP19.65■□□□□ 0.74
VPS28-209ENST00000528142 ANKRD60Q9BZ19 345 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 RAD21L1Q9H4I0 556 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 TMEM38AQ9H6F2 299 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 TBC1D17Q9HA65 648 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 ACSS1Q9NUB1 689 aaPredicted RBP19.65■□□□□ 0.74
VPS28-209ENST00000528142 ANKMY1Q9P2S6 941 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 PILRAQ9UKJ1 303 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 SNX11Q9Y5W9 270 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 A0A1W2PR48 441 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 CTSVO60911 334 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 JUNDP17535 347 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 SOAT1P35610 550 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 RPS9P46781 194 aaKnown RBP19.65■□□□□ 0.74
VPS28-209ENST00000528142 MLC1Q15049 377 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 TEAD4Q15561 434 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 FIGLAQ6QHK4 219 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 ASPGQ86U10 573 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 PSMA8Q8TAA3 256 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 NECAB3Q96P71 396 aaPredicted RBP19.65■□□□□ 0.74
VPS28-209ENST00000528142 NLNQ9BYT8 704 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 IL1RAPQ9NPH3 570 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 SIRT3Q9NTG7 399 aaPredicted RBP19.65■□□□□ 0.74
VPS28-209ENST00000528142 MAP4K5Q9Y4K4 846 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 ATG4BQ9Y4P1 393 aa19.65■□□□□ 0.74
VPS28-209ENST00000528142 C2orf74A8MZ97 194 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms