RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 CCDC28BQ9BUN5 200 aa14.49□□□□□ -0.09
LSM1-203ENST00000520755 YIPF2Q9BWQ6 316 aa14.49□□□□□ -0.09
LSM1-203ENST00000520755 SLC22A11Q9NSA0 550 aa14.49□□□□□ -0.09
LSM1-203ENST00000520755 ZMIZ1Q9ULJ6 1067 aa14.49□□□□□ -0.09
LSM1-203ENST00000520755 NAALAD2Q9Y3Q0 740 aa14.49□□□□□ -0.09
LSM1-203ENST00000520755 APC2O95996 2303 aa14.49□□□□□ -0.09
LSM1-203ENST00000520755 IGF2RP11717 2491 aa14.49□□□□□ -0.09
LSM1-203ENST00000520755 CHD8Q9HCK8 2581 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 ACACAQ13085 2346 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 E9PBE3 544 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 SGK494L7N484 410 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 KLHL41O60662 606 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 VPS4BO75351 444 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 SEC22BO75396 215 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 RDH16O75452 317 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 NSA2O95478 260 aaKnown RBP14.48□□□□□ -0.09
LSM1-203ENST00000520755 PIM1P11309 404 aaPredicted RBP14.48□□□□□ -0.09
LSM1-203ENST00000520755 LBPP18428 481 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 SDC1P18827 310 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 HIST1H1TP22492 207 aaPredicted RBP14.48□□□□□ -0.09
LSM1-203ENST00000520755 F8A1P23610 371 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 TACR1P25103 407 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 ATP5A1P25705 553 aaKnown RBP14.48□□□□□ -0.09
LSM1-203ENST00000520755 SSR2P43308 183 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 ARFIP2P53365 341 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 ERVK-8P63133 956 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 MAT1AQ00266 395 aaKnown RBP14.48□□□□□ -0.09
LSM1-203ENST00000520755 NCF4Q15080 339 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 OR4C11Q6IEV9 310 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 MRM1Q6IN84 353 aaKnown RBP14.48□□□□□ -0.09
LSM1-203ENST00000520755 ACAD11Q709F0 780 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 COX15Q7KZN9 410 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 NUDT13Q86X67 352 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 ENDOVQ8N8Q3 282 aaKnown RBP14.48□□□□□ -0.09
LSM1-203ENST00000520755 FNDC5Q8NAU1 212 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 OR5T3Q8NGG3 340 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 METTL2AQ96IZ6 378 aaKnown RBP14.48□□□□□ -0.09
LSM1-203ENST00000520755 TBCDQ9BTW9 1192 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 ZNF385DQ9H6B1 395 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 DDX31Q9H8H2 851 aaKnown RBP14.48□□□□□ -0.09
LSM1-203ENST00000520755 PFDN4Q9NQP4 134 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 NMRK1Q9NWW6 199 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 ASIC5Q9NY37 505 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 IL17BQ9UHF5 180 aa14.48□□□□□ -0.09
LSM1-203ENST00000520755 URB1O60287 2271 aaKnown RBP14.47□□□□□ -0.09
LSM1-203ENST00000520755 C21orf140B9A014 251 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 PCDH7O60245 1069 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 KLK1P06870 262 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 ACPPP15309 386 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 ITPKBP27987 946 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 DIO3P55073 304 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 HNRNPH2P55795 449 aaKnown RBP14.47□□□□□ -0.09
LSM1-203ENST00000520755 RPS18P62269 152 aaKnown RBP14.47□□□□□ -0.09
LSM1-203ENST00000520755 RPS15P62841 145 aaKnown RBP14.47□□□□□ -0.09
LSM1-203ENST00000520755 SKP1P63208 163 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 OLR1P78380 273 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 BTN3A2P78410 334 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 CBX1P83916 185 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 EMX2Q04743 252 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 TGM3Q08188 693 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 DSG2Q14126 1118 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 SYT16Q17RD7 645 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 SMU1Q2TAY7 513 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 BROXQ5VW32 411 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 NXNQ6DKJ4 435 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 NOXRED1Q6NXP6 359 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 ZCCHC7Q8N3Z6 543 aaKnown RBP14.47□□□□□ -0.09
LSM1-203ENST00000520755 ACOT4Q8N9L9 421 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 SRFBP1Q8NEF9 429 aaKnown RBP14.47□□□□□ -0.09
LSM1-203ENST00000520755 CEP70Q8NHQ1 597 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 CCNL2Q96S94 520 aaPredicted RBP14.47□□□□□ -0.09
LSM1-203ENST00000520755 CENPKQ9BS16 269 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 AIG1Q9NVV5 245 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 HCN3Q9P1Z3 774 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 TRPC4Q9UBN4 977 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 CTSFQ9UBX1 484 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 MCM8Q9UJA3 840 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 KCND3Q9UK17 655 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 ADAM29Q9UKF5 820 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 MRPS18BQ9Y676 258 aaKnown RBP14.47□□□□□ -0.09
LSM1-203ENST00000520755 DMXL2Q8TDJ6 3036 aa14.47□□□□□ -0.09
LSM1-203ENST00000520755 H0YIG0 161 aa14.46□□□□□ -0.09
LSM1-203ENST00000520755 TERTO14746 1132 aaKnown RBP14.46□□□□□ -0.09
LSM1-203ENST00000520755 ONECUT2O95948 504 aa14.46□□□□□ -0.09
LSM1-203ENST00000520755 RAB40ALP0C0E4 278 aa14.46□□□□□ -0.09
LSM1-203ENST00000520755 BCKDHAP12694 445 aa14.46□□□□□ -0.09
LSM1-203ENST00000520755 WT1P19544 449 aaPredicted RBP14.46□□□□□ -0.09
LSM1-203ENST00000520755 TSFMP43897 325 aaKnown RBP14.46□□□□□ -0.09
LSM1-203ENST00000520755 MTTPP55157 894 aa14.46□□□□□ -0.09
LSM1-203ENST00000520755 FOXL2P58012 376 aa14.46□□□□□ -0.09
LSM1-203ENST00000520755 TLE3Q04726 772 aa14.46□□□□□ -0.09
LSM1-203ENST00000520755 RUNX2Q13950 521 aa14.46□□□□□ -0.09
LSM1-203ENST00000520755 FAM69BQ5VUD6 431 aa14.46□□□□□ -0.09
LSM1-203ENST00000520755 IL23RQ5VWK5 629 aa14.46□□□□□ -0.09
LSM1-203ENST00000520755 OVCH1Q7RTY7 1134 aa14.46□□□□□ -0.09
LSM1-203ENST00000520755 CLNKQ7Z7G1 428 aa14.46□□□□□ -0.09
LSM1-203ENST00000520755 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.46□□□□□ -0.091e-6■■□□□ 11.8
LSM1-203ENST00000520755 FKBP10Q96AY3 582 aa14.46□□□□□ -0.09
LSM1-203ENST00000520755 CATSPER2Q96P56 530 aa14.46□□□□□ -0.09
LSM1-203ENST00000520755 SERINC2Q96SA4 455 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms