RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 DAPP1Q9UN19 280 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 NPIPA1Q9UND3 350 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 CLCA3PQ9Y6N3 262 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 DOCK10Q96BY6 2186 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 ASPDHA6ND91 283 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 KLRC4-KLRK1H3BQV0 150 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 SLC19A2O60779 497 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 PRAMEF4O60810 478 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 CTNSO60931 367 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 ZFAND5O76080 213 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 ESRRAP11474 423 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-215ENST00000515516 GFAPP14136 432 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 TRHRP34981 398 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-215ENST00000515516 CA7P43166 264 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 PHEXP78562 749 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 DLG1Q12959 904 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 ELAVL1Q15717 326 aaKnown RBP12.76□□□□□ -0.37
TCOF1-215ENST00000515516 WHAMMP3Q1A5X7 153 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 PRAMEF9Q5VWM5 478 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 MYLK4Q86YV6 388 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-215ENST00000515516 TEX9Q8N6V9 391 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 RHEBL1Q8TAI7 183 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 UBTD2Q8WUN7 234 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 ZNF592Q92610 1267 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 DAZLQ92904 295 aaKnown RBP12.76□□□□□ -0.37
TCOF1-215ENST00000515516 NCLNQ969V3 563 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 CMTM7Q96FZ5 175 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 GPR137Q96N19 417 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 ATOH8Q96SQ7 321 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 LYRM4Q9HD34 91 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 PRDM7Q9NQW5 492 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 KLF13Q9Y2Y9 288 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-215ENST00000515516 IKBKGQ9Y6K9 419 aa12.76□□□□□ -0.37
TCOF1-215ENST00000515516 A0A096LPK6 155 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 CYR61O00622 381 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 NME2P1O60361 137 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 TGFB1P01137 390 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 C2P06681 752 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 ZNF24P17028 368 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 CD22P20273 847 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 NME2P22392 152 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 TYK2P29597 1187 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 GMPRP36959 345 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 SSR2P43308 183 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 SERPINB8P50452 374 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 SSR4P51571 173 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 RAP1GDS1P52306 607 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 HNRNPFP52597 415 aaKnown RBP12.75□□□□□ -0.37
TCOF1-215ENST00000515516 SERTAD2Q14140 314 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 ACAP2Q15057 778 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 ZNF468Q5VIY5 522 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-215ENST00000515516 ADNP2Q6IQ32 1131 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 RPTNQ6XPR3 784 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 LAS2Q8IYD9 372 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 ACOT4Q8N9L9 421 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 POGLUT1Q8NBL1 392 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 APCDD1LQ8NCL9 501 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 TMEM52Q8NDY8 209 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 ZNF473Q8WTR7 871 aaKnown RBP12.75□□□□□ -0.37
TCOF1-215ENST00000515516 KCTD4Q8WVF5 259 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 REPS1Q96D71 796 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 C16orf45Q96MC5 204 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-215ENST00000515516 FRMD6Q96NE9 622 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 CSF3RQ99062 836 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 MS4A8Q9BY19 250 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 ALOXE3Q9BYJ1 711 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 TSPAN10Q9H1Z9 355 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-215ENST00000515516 RUBCNLQ9H714 662 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 TRIM45Q9H8W5 580 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-215ENST00000515516 ACTR8Q9H981 624 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 SNX15Q9NRS6 342 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 ERVK-11Q9UQG0 969 aa12.75□□□□□ -0.37
TCOF1-215ENST00000515516 TNPO3Q9Y5L0 923 aaKnown RBP12.75□□□□□ -0.37
TCOF1-215ENST00000515516 SPTAN1Q13813 2472 aaKnown RBP12.74□□□□□ -0.37
TCOF1-215ENST00000515516 PRSS44E7EML9 344 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 ASNA1O43681 348 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 DYRK3O43781 588 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 SH3BGRLO75368 114 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 ITGA10O75578 1167 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 KLHL2O95198 593 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 TBX6O95947 436 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-215ENST00000515516 INHBAP08476 426 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 ABOP16442 354 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 EPORP19235 508 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 HIST1H1TP22492 207 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-215ENST00000515516 CPN2P22792 545 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 ATP5A1P25705 553 aaKnown RBP12.74□□□□□ -0.37
TCOF1-215ENST00000515516 PPP2R1BP30154 601 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 PIK3CGP48736 1102 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 IRF9Q00978 393 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 DDX39BQ13838 428 aaKnown RBP12.74□□□□□ -0.37
TCOF1-215ENST00000515516 PFKFB4Q16877 469 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 KHDRBS2Q5VWX1 349 aaKnown RBP12.74□□□□□ -0.37
TCOF1-215ENST00000515516 LIPJQ5W064 366 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 SP5Q6BEB4 398 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-215ENST00000515516 GRHL2Q6ISB3 625 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 HSDL2Q6YN16 418 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 TAOK1Q7L7X3 1001 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 SPPL2CQ8IUH8 684 aa12.74□□□□□ -0.37
TCOF1-215ENST00000515516 GPALPP1Q8IXQ4 340 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms