RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ATOH8Q96SQ7 321 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 PHOX2BQ99453 314 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 DSN1Q9H410 356 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 ARNT2Q9HBZ2 717 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 MYO5AQ9Y4I1 1855 aaKnown RBP12.18□□□□□ -0.46
USP53-209ENST00000514665 RHPN2P1A8MT19 583 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 E7EQ34 232 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 PSMD9O00233 223 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 SLC9A3P48764 834 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 ODF4Q2M2E3 257 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 GFOD2Q3B7J2 385 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 SLC15A4Q8N697 577 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 DTX3Q8N9I9 347 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 PJA1Q8NG27 643 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 CSNK1G1Q9HCP0 422 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 ZDHHC7Q9NXF8 308 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 GPR83Q9NYM4 423 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 CCDC59Q9P031 241 aaKnown RBP12.18□□□□□ -0.46
USP53-209ENST00000514665 FKBP7Q9Y680 259 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 B4DGG1 531 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 RCBTB2O95199 551 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 ASGR2P07307 311 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 BMP8BP34820 402 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 APLP1P51693 650 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 AP3S2P59780 193 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 KLHL24Q6TFL4 600 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 MAVSQ7Z434 540 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 GALNTL5Q7Z4T8 443 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 BMP8AQ7Z5Y6 402 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 ZSWIM9Q86XI8 627 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 LSMEM2Q8N112 164 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 TRAM1L1Q8N609 369 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 OR56A1Q8NGH5 318 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 NCSTNQ92542 709 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 TFAP2CQ92754 450 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 ZNF597Q96LX8 424 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 PIP5K1AQ99755 562 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 RBCK1Q9BYM8 510 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 TLR9Q9NR96 1032 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 SEC14L4Q9UDX3 406 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 TBC1D24Q9ULP9 559 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 GPR45Q9Y5Y3 372 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 USP3Q9Y6I4 520 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 PTPRZ1P23471 2315 aaPredicted RBP12.17□□□□□ -0.46
USP53-209ENST00000514665 HMX2A2RU54 273 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 TFAP2AP05549 437 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 UQCRC2P22695 453 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 NTHL1P78549 312 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 RBBP4Q09028 425 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 FADDQ13158 208 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.17□□□□□ -0.46
USP53-209ENST00000514665 CAMKVQ8NCB2 501 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 GPR26Q8NDV2 337 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 OR51A7Q8NH64 312 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 OR51I1Q9H343 314 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 CREBZFQ9NS37 354 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 EIF3KQ9UBQ5 218 aaKnown RBP12.17□□□□□ -0.46
USP53-209ENST00000514665 RWDD3Q9Y3V2 267 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 ALS2Q96Q42 1657 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 FEZF1A0PJY2 475 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 WWP2O00308 870 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 MPC1LP0DKB6 136 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 SRCP12931 536 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 ZNF3P17036 446 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 VLDLRP98155 873 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 TRAM2Q15035 370 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 SPHARQ15513 63 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 RAB41Q5JT25 222 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 CES4AQ5XG92 561 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 RASSF6Q6ZTQ3 369 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 LILRA2Q8N149 483 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 NAGSQ8N159 534 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 ZFP41Q8N8Y5 198 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 ABHD11Q8NFV4 315 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 OR52E4Q8NGH9 312 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 METTL21AQ8WXB1 218 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 C1QTNF1Q9BXJ1 281 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 COMMD4Q9H0A8 199 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 ABCG4Q9H172 646 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 USP22Q9UPT9 525 aa12.17□□□□□ -0.46
USP53-209ENST00000514665 FBP2O00757 339 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 KIAA0513O60268 411 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 SLITRK5O94991 958 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 POLR2CP19387 275 aaPredicted RBP12.16□□□□□ -0.46
USP53-209ENST00000514665 NDUFS1P28331 727 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 IL12BP29460 328 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 UGT8Q16880 541 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 PGBD2Q6P3X8 592 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 C17orf99Q6UX52 265 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 ERN2Q76MJ5 926 aaKnown RBP12.16□□□□□ -0.46
USP53-209ENST00000514665 COMMD6Q7Z4G1 85 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 ADGRD2Q7Z7M1 963 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 LINC00471Q8N535 108 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 ZBTB8BQ8NAP8 495 aaPredicted RBP12.16□□□□□ -0.46
USP53-209ENST00000514665 OR5P2Q8WZ92 322 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 NDC1Q9BTX1 674 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 CLCA3PQ9Y6N3 262 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 LOC285095A0A1B0GVY8 99 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 C7orf72A4D263 438 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 VILLO15195 856 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms