RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CCDC190Q86UF4 302 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 CFAP206Q8IYR0 622 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 CRIPAKQ8N1N5 446 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 CYB5D2Q8WUJ1 264 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 GEMIN6Q8WXD5 167 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 TRNT1Q96Q11 434 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 EMILIN2Q9BXX0 1053 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 ABT1Q9ULW3 272 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 WBP11Q9Y2W2 641 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 PSIP1O75475 530 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 SOD2P04179 222 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 XCR1P46094 333 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 HMGN2P46Q86SG4 172 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 RBM45Q8IUH3 476 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 TRMT61AQ96FX7 289 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 C19orf43Q9BQ61 176 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 WRAP53Q9BUR4 548 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 SPATA9Q9BWV2 254 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 TAS2R9Q9NYW1 312 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 C5AR2Q9P296 337 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 CCL26Q9Y258 94 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 ITM2BQ9Y287 266 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 ANKDD1BA6NHY2 528 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 RTCAO00442 366 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 IDH3BO43837 385 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 TPST2O60704 377 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 LEFTY1O75610 366 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 APOL3O95236 402 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 IFNW1P05000 195 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 FURINP09958 794 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 PCSK2P16519 638 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 CBLP22681 906 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 TBPL1P62380 186 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 POLR2LP62875 67 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 MRPS15P82914 257 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 TMEM115Q12893 351 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 PUM1Q14671 1186 aaKnown RBP eCLIP8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 EIF4HQ15056 248 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 ZNF367Q7RTV3 350 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 OR2A12Q8NGT7 310 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 C16orf78Q8WTQ4 265 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 MAGEB10Q96LZ2 347 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 BARHL1Q9BZE3 327 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 BRF2Q9HAW0 419 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 HHATLQ9HCP6 504 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 SLC25A13Q9UJS0 675 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 HS3ST2Q9Y278 367 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 PPIL1Q9Y3C6 166 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 FAM47E-STBD1D6RA91 191 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 H3BQ06 376 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 LEFTY2O00292 366 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 OR10H3O60404 316 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 GPR37L1O60883 481 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 IL3P08700 152 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 HSD3B1P14060 373 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 TNNI3P19429 210 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 S100A1P23297 94 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 HSD3B2P26439 372 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 ALDH9A1P49189 494 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 BAK1Q16611 211 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 ZNF284Q2VY69 593 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 TIMM50Q3ZCQ8 353 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 FOPNLQ96NB1 174 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 OPALINQ96PE5 141 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 NRTNQ99748 197 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 MIEF1Q9NQG6 463 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 TBC1D24Q9ULP9 559 aa8.84□□□□□ -0.99
LIMCH1-215ENST00000512632 FFAR1O14842 300 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 NPC1O15118 1278 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 FHP07954 510 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 NPPBP16860 134 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 LIM2P55344 173 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 LHX8Q68G74 356 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 TMC5Q6UXY8 1006 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 HTR3DQ70Z44 454 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 OLIG3Q7RTU3 272 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 SZRD1Q7Z422 152 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 LAX1Q8IWV1 398 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 TCEANCQ8N8B7 351 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 RAET1EQ8TD07 263 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 IL17FQ96PD4 163 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 CDCA4Q9BXL8 241 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 BHLHE41Q9C0J9 482 aaPredicted RBP8.84□□□□□ -1
LIMCH1-215ENST00000512632 POLR2J2Q9GZM3 115 aaKnown RBP8.84□□□□□ -1
LIMCH1-215ENST00000512632 SLC6A16Q9GZN6 736 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 CTPS2Q9NRF8 586 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 ATP6V1HQ9UI12 483 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 ZNF221Q9UK13 617 aa8.84□□□□□ -1
LIMCH1-215ENST00000512632 DOCK6Q96HP0 2047 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 ZAR1LA6NP61 321 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 TLR4O00206 839 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 TEX28O15482 410 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 OLFM2O95897 454 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 BCHEP06276 602 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 HTR3AP46098 478 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 PXNP49023 591 aaPredicted RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 LIMK1P53667 647 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 DMPKQ09013 629 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 KCNC3Q14003 757 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms