RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 CD58P19256 250 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TYMPP19971 482 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 PMCHP20382 165 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 PTAFRP25105 342 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 CCR1P32246 355 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 RPA3P35244 121 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 ASCL1P50553 236 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 ZNF84P51523 738 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 CLCN7P51798 805 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 HNRNPA3P51991 378 aaKnown RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 HMGCS2P54868 508 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 CDH15P55291 814 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 RAB10P61026 200 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 HERV-K104P61576 105 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 POU6F2P78424 691 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 KIAA0141Q14154 515 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 GRM7Q14831 915 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 HAGHQ16775 308 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 REP15Q6BDI9 236 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 OR10K2Q6IF99 312 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 MON1BQ7L1V2 547 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 GRINAQ7Z429 371 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 MARCH9Q86YJ5 346 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 C15orf54Q8N8G6 183 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 C8orf58Q8NAV2 365 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 OR5L2Q8NGL0 311 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 OR4C15Q8NGM1 316 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 OR56B4Q8NH76 319 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 ZNF296Q8WUU4 475 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 BCL7CQ8WUZ0 217 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 MBD3L1Q8WWY6 194 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 GEMIN6Q8WXD5 167 aaKnown RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 C7orf34Q96L11 122 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TMEM68Q96MH6 324 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 ZNF641Q96N77 438 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 OR7D2Q96RA2 312 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 CIB1Q99828 191 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 DBNDD2Q9BQY9 259 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 NIPSNAP3BQ9BS92 247 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 SLC7A5P2Q9GIP4 190 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TMEM39BQ9GZU3 492 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 SLCO5A1Q9H2Y9 848 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 CPVLQ9H3G5 476 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 INPP5EQ9NRR6 644 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 NLGN3Q9NZ94 848 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 SH2B3Q9UQQ2 575 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 COQ4Q9Y3A0 265 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TCAF1Q9Y4C2 921 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 PCDHA8Q9Y5H6 950 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TUBGCP6Q96RT7 1819 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 ZNF804BA4D1E1 1349 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 A0A0J9YYE9 177 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 LOC100130705A0A1B0GUX0 176 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 RBAK-RBAKDNI3L0D1 243 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 NFKBIEO00221 500 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 RFXANKO14593 260 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 EI24O14681 340 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 TOX3O15405 576 aaPredicted RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 CNOT4O95628 575 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 BPNT1O95861 308 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CATP04040 527 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 OR8U9P0C7N5 309 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 APEHP13798 732 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 TSPAN8P19075 237 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CNR1P21554 472 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 TCEA1P23193 301 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 RBMS1P29558 406 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 ADH7P40394 386 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 MDH2P40926 338 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 KCNJ5P48544 419 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CDK8P49336 464 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 TTPAP49638 278 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CEBPDP49716 269 aaPredicted RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 TAS2R41P59536 307 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CHRNEQ04844 493 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 C19orf57Q0VDD7 668 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 LCP2Q13094 533 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 SNTB2Q13425 540 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 RBM39Q14498 530 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 RAB39AQ14964 217 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 ACSBG2Q5FVE4 666 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 FFAR4Q5NUL3 377 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CYB5R2Q6BCY4 276 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 HEPHL1Q6MZM0 1159 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 MTFR2Q6P444 385 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 SHC4Q6S5L8 630 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 ZNF621Q6ZSS3 439 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 TPRA1Q86W33 373 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 GPSM1Q86YR5 675 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 KDM8Q8N371 416 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 FBXL16Q8N461 479 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 EXD3Q8N9H8 876 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 GMCL1P1Q8NEA9 526 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 ZFAND1Q8TCF1 268 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 HERVK_113Q902F9 699 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 TRIB2Q92519 343 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 TANKQ92844 425 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 SLCO2A1Q92959 643 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 UPRTQ96BW1 309 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 ZNF75AQ96N20 296 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms