RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 GPSM1Q86YR5 675 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 ZNF595Q8IYB9 648 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 ZFP62Q8NB50 900 aaPredicted RBP10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 C16orf52Q8NHV5 167 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 FAM57AQ8TBR7 257 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 PYROXD1Q8WU10 500 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 EXT2Q93063 718 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 PTCD3Q96EY7 689 aaKnown RBP10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 TSPAN17Q96FV3 270 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 SEC16BQ96JE7 1060 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 KRT12Q99456 494 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 PITHD1Q9GZP4 211 aaPredicted RBP10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 REXO4Q9GZR2 422 aaKnown RBP10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 EHD1Q9H4M9 534 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 CNOT10Q9H9A5 744 aaKnown RBP10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 GRPEL1Q9HAV7 217 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 TIMMDC1Q9NPL8 285 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 KCMF1Q9P0J7 381 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 ZNF490Q9ULM2 529 aaPredicted RBP10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 DAPP1Q9UN19 280 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 ERVK-11Q9UQG0 969 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 YARS2Q9Y2Z4 477 aaKnown RBP10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 ZNF407Q9C0G0 2248 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 FBN2P35556 2912 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 PINLYPA6NC86 204 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 TMEM200CA6NKL6 621 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 A8MVJ9 347 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 CYR61O00622 381 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 STK16O75716 305 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 OR2J2O76002 312 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 TUBB4AP04350 444 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 IFNA16P05015 189 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 CD1DP15813 335 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 CD22P20273 847 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 SSTR2P30874 369 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 HPDP32754 393 aaPredicted RBP10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 GGT5P36269 586 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 ILF2Q12905 390 aaKnown RBP10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 CBLBQ13191 982 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 BMPR2Q13873 1038 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 DOC2AQ14183 400 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 ELAVL1Q15717 326 aaKnown RBP10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 PDK4Q16654 411 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 SULT1C3Q6IMI6 304 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 ABHD17CQ6PCB6 329 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 TMEM132CQ8N3T6 1108 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 MARVELD2Q8N4S9 558 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 PDPRQ8NCN5 879 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 BBOF1Q8ND07 529 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 PSD4Q8NDX1 1056 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 OR52N2Q8NGI0 321 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 CA5BP1Q8WTZ4 195 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 ASB15Q8WXK1 588 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 CDKL2Q92772 493 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 WDR34Q96EX3 536 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 F2RL3Q96RI0 385 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 GPR22Q99680 433 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 RBBP8Q99708 897 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 EFCAB11Q9BUY7 163 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 DPH5Q9H2P9 285 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 SAYSD1Q9NPB0 183 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 DEPPQ9NTK1 212 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 HPF1Q9NWY4 346 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 COQ3Q9NZJ6 369 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 CD274Q9NZQ7 290 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 TXNDC16Q9P2K2 825 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 HRH3Q9Y5N1 445 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 CLCA3PQ9Y6N3 262 aa10.73□□□□□ -0.69
HMGCS1-204ENST00000507293 PDZD2O15018 2839 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 A0A0G2JMM0 328 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 A0A1W2PPB8 328 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 A0A1W2PRS3 328 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 SYNDIG1LA6NDD5 238 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 FAM166BA8MTA8 275 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 KIR3DP1A8MWS1 328 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 WWP2O00308 870 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 CCNT2O60583 730 aaKnown RBP10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 CTNSO60931 367 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 PDE9AO76083 593 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 OR6B1O95007 311 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 S100BP04271 92 aaPredicted RBP10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 STMN1P16949 149 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 EPORP19235 508 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 GMPRP36959 345 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 GP5P40197 560 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 SOX3P41225 446 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 MSH2P43246 934 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 NR0B1P51843 470 aaKnown RBP10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 HK2P52789 917 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 KRTAP10-9P60411 292 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 ATP6V0D1P61421 351 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 PLGLB1Q02325 96 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 IRF8Q02556 426 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 TGM3Q08188 693 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 CHIT1Q13231 466 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 RCN2Q14257 317 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 PAGE2BQ5JRK9 111 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 CDKL4Q5MAI5 379 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 IL20RBQ6UXL0 311 aa10.72□□□□□ -0.69
HMGCS1-204ENST00000507293 HSDL2Q6YN16 418 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms