RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 DMRTC2Q8IXT2 367 aaPredicted RBP19.56■□□□□ 0.72
SQSTM1-210ENST00000506042 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.56■□□□□ 0.72
SQSTM1-210ENST00000506042 AGGF1Q8N302 714 aaeCLIP19.56■□□□□ 0.72
SQSTM1-210ENST00000506042 FAM109AQ8N4B1 249 aa19.56■□□□□ 0.72
SQSTM1-210ENST00000506042 OR2M7Q8NG81 312 aa19.56■□□□□ 0.72
SQSTM1-210ENST00000506042 TSPAN17Q96FV3 270 aa19.56■□□□□ 0.72
SQSTM1-210ENST00000506042 SMC6Q96SB8 1091 aa19.56■□□□□ 0.72
SQSTM1-210ENST00000506042 OSBPL9Q96SU4 736 aa19.56■□□□□ 0.72
SQSTM1-210ENST00000506042 SPNS1Q9H2V7 528 aa19.56■□□□□ 0.72
SQSTM1-210ENST00000506042 EHD1Q9H4M9 534 aa19.56■□□□□ 0.72
SQSTM1-210ENST00000506042 F8P00451 2351 aa19.56■□□□□ 0.72
SQSTM1-210ENST00000506042 PDZD2O15018 2839 aa19.56■□□□□ 0.72
SQSTM1-210ENST00000506042 LRIT2A6NDA9 550 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 NPIPA2E9PIF3 369 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 NPIPA3F8WFD2 350 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 CTNSO60931 367 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 GABRA1P14867 456 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 CNR1P21554 472 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 ZFP36L2P47974 494 aaKnown RBP19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 KCNC1P48547 511 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 ART1P52961 327 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 FOLH1Q04609 750 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 MGAT5Q09328 741 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 FRG1Q14331 258 aaKnown RBP19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 SLBPQ14493 270 aaKnown RBP eCLIP19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 TESK1Q15569 626 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 PPP1R3AQ16821 1122 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 FAM47EQ6ZV65 393 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 MDGA2Q7Z553 956 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 SHISA5Q8N114 240 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 SLCO2A1Q92959 643 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 UBE2E3Q969T4 207 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 MS4A6EQ96DS6 147 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 ART5Q96L15 291 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 KCNC2Q96PR1 638 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 CENPKQ9BS16 269 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 EFCAB11Q9BUY7 163 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 KLHL31Q9H511 634 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 IL1RL2Q9HB29 575 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 WWOXQ9NZC7 414 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 B4GALT7Q9UBV7 327 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 ACAD8Q9UKU7 415 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 CHMP2BQ9UQN3 213 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 C2CD3Q4AC94 2353 aa19.55■□□□□ 0.72
SQSTM1-210ENST00000506042 FAM95CA0A1B0GW59 222 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 NKX2-6A6NCS4 301 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 NPEPPSL1A6NEC2 478 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 SUSD5O60279 629 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 DNAJB6O75190 326 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 IGFBP2P18065 325 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 ELK3P41970 407 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 MAN2A2P49641 1150 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 GPR143P51810 404 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 PLA2G16P53816 162 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 GXYLT1Q4G148 440 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 CDKL4Q5MAI5 379 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 ZNF585AQ6P3V2 769 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 DND1Q8IYX4 353 aaKnown RBP19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 FAM47BQ8NA70 645 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 OR52N2Q8NGI0 321 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 SLC22A8Q8TCC7 542 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 TTTY12Q9BZ98 90 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 ZDHHC11Q9H8X9 412 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 DNAJC11Q9NVH1 559 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 TNFRSF10DQ9UBN6 386 aa19.54■□□□□ 0.72
SQSTM1-210ENST00000506042 ANKRD17O75179 2603 aaKnown RBP19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 FAM166BA8MTA8 275 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 ZNHIT1O43257 154 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 ZSCAN12O43309 604 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 TOXO94900 526 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 PPP2R1BP30154 601 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 KRTAP10-9P60411 292 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 SLC10A1Q14973 349 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 SF3B4Q15427 424 aaKnown RBP eCLIP19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 KCTD19Q17RG1 926 aaPredicted RBP19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 SLC25A35Q3KQZ1 300 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 SLCO4C1Q6ZQN7 724 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 CDKL2Q92772 493 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 PTCD3Q96EY7 689 aaKnown RBP19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 RASL10BQ96S79 203 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 OR8D2Q9GZM6 311 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 LYRM4Q9HD34 91 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 VTI1BQ9UEU0 232 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 DAPP1Q9UN19 280 aa19.53■□□□□ 0.72
SQSTM1-210ENST00000506042 WWP2O00308 870 aa19.52■□□□□ 0.72
SQSTM1-210ENST00000506042 CDC7O00311 574 aa19.52■□□□□ 0.72
SQSTM1-210ENST00000506042 TCP1P17987 556 aaKnown RBP19.52■□□□□ 0.72
SQSTM1-210ENST00000506042 SERPINB1P30740 379 aa19.52■□□□□ 0.72
SQSTM1-210ENST00000506042 SOX3P41225 446 aa19.52■□□□□ 0.72
SQSTM1-210ENST00000506042 NUP107P57740 925 aa19.52■□□□□ 0.72
SQSTM1-210ENST00000506042 PPP2R2AP63151 447 aa19.52■□□□□ 0.72
SQSTM1-210ENST00000506042 SNX31Q8N9S9 440 aa19.52■□□□□ 0.72
SQSTM1-210ENST00000506042 NINJ1Q92982 152 aa19.52■□□□□ 0.72
SQSTM1-210ENST00000506042 KRT12Q99456 494 aa19.52■□□□□ 0.72
SQSTM1-210ENST00000506042 TBCDQ9BTW9 1192 aa19.52■□□□□ 0.72
SQSTM1-210ENST00000506042 ALOXE3Q9BYJ1 711 aa19.52■□□□□ 0.72
SQSTM1-210ENST00000506042 BOKQ9UMX3 212 aaPredicted RBP19.52■□□□□ 0.72
SQSTM1-210ENST00000506042 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.52■□□□□ 0.72
SQSTM1-210ENST00000506042 FBN2P35556 2912 aa19.52■□□□□ 0.71
SQSTM1-210ENST00000506042 A0A0G2JN53 185 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms