RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ERVK-16P61578 105 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 BTG1P62324 171 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 RPP38P78345 283 aaKnown RBP2.83□□□□□ -1.96
VPS50-219ENST00000495039 YWHAHQ04917 246 aaPredicted RBP2.83□□□□□ -1.96
VPS50-219ENST00000495039 MEP1BQ16820 701 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 LRRC37A5PQ49AS3 106 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 IQCCQ4KMZ1 466 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 CCDC158Q5M9N0 1113 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 RNLSQ5VYX0 342 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 TCEAL6Q6IPX3 200 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 SLC27A4Q6P1M0 643 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 C3P1Q6ZMU1 363 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 GBP6Q6ZN66 633 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 TIPARPQ7Z3E1 657 aaKnown RBP2.83□□□□□ -1.96
VPS50-219ENST00000495039 ZC3H3Q8IXZ2 948 aaKnown RBP2.83□□□□□ -1.96
VPS50-219ENST00000495039 CD177Q8N6Q3 437 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 TMEM99Q8N816 258 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 OR7G3Q8NG95 312 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 OR52B6Q8NGF0 335 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 GDAP1Q8TB36 358 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 ATP6V1E2Q96A05 226 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 LURAP1Q96LR2 239 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 PCDHB18PQ96TA0 734 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 HNRNPABQ99729 332 aaKnown RBP2.83□□□□□ -1.96
VPS50-219ENST00000495039 ATF6BQ99941 703 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 UTP14AQ9BVJ6 771 aaKnown RBP2.83□□□□□ -1.96
VPS50-219ENST00000495039 PAPOLGQ9BWT3 736 aaKnown RBP2.83□□□□□ -1.96
VPS50-219ENST00000495039 PARLQ9H300 379 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 SRD5A3Q9H8P0 318 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 TMEM161AQ9NX61 479 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 DBF4Q9UBU7 674 aaPredicted RBP2.83□□□□□ -1.96
VPS50-219ENST00000495039 KLK11Q9UBX7 282 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 LEF1Q9UJU2 399 aaPredicted RBP2.83□□□□□ -1.96
VPS50-219ENST00000495039 FBXL5Q9UKA1 691 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 GPR132Q9UNW8 380 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 PFASO15067 1338 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 C2orf92A0A1B0GVN3 265 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 ANKDD1BA6NHY2 528 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 ZNF732B4DXR9 585 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 H0Y9J4 135 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 RNF103O00237 685 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 MLNRO43193 412 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 TLX2O43763 284 aaPredicted RBP2.82□□□□□ -1.96
VPS50-219ENST00000495039 GH1P01241 217 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 FRKP42685 505 aaPredicted RBP2.82□□□□□ -1.96
VPS50-219ENST00000495039 ST8SIA6P61647 398 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 AKAP17AQ02040 695 aaKnown RBP2.82□□□□□ -1.96
VPS50-219ENST00000495039 MAPK11Q15759 364 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 SPANXN4Q5MJ08 99 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 PM20D1Q6GTS8 502 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 PODNL1Q6PEZ8 512 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 RFPL4BQ6ZWI9 263 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 OTOAQ7RTW8 1153 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 TICAM2Q86XR7 235 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 OR9Q2Q8NGE9 314 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 TEKT1Q969V4 418 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 MTIF3Q9H2K0 278 aaKnown RBP2.82□□□□□ -1.96
VPS50-219ENST00000495039 CUEDC2Q9H467 287 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 ITM2BQ9Y287 266 aa2.82□□□□□ -1.96
VPS50-219ENST00000495039 A4D1N5 150 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 G3V2L1 256 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 M0R296 226 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 SLC33A1O00400 549 aaPredicted RBP2.81□□□□□ -1.96
VPS50-219ENST00000495039 SIGLEC5O15389 551 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 TGDSO95455 350 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 C8orf89P0DMQ9 161 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 EDNRAP25101 427 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 SRD5A2P31213 254 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 HNRNPA3P51991 378 aaKnown RBP2.81□□□□□ -1.96
VPS50-219ENST00000495039 FKBP1BP68106 108 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 CNTN1Q12860 1018 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 NFE2L1Q14494 772 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 LRRC38Q5VT99 294 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 CCBE1Q6UXH8 406 aaPredicted RBP2.81□□□□□ -1.96
VPS50-219ENST00000495039 C17orf107Q6ZR85 190 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 LINC00696Q6ZRV3 163 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 Q6ZVQ6 151 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 Q71RC1 249 aaPredicted RBP2.81□□□□□ -1.96
VPS50-219ENST00000495039 TDHQ8IZJ6 230 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 CLYBLQ8N0X4 340 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 C11orf42Q8N5U0 333 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 TMCO5AQ8N6Q1 288 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 SMYD1Q8NB12 490 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 OR5M9Q8NGP3 310 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 SEPT8Q92599 483 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 CDKN2AIPNLQ96HQ2 116 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 GPR173Q9NS66 373 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 THAP10Q9P2Z0 257 aaPredicted RBP2.81□□□□□ -1.96
VPS50-219ENST00000495039 IKZF3Q9UKT9 509 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 SLC6A5Q9Y345 797 aa2.81□□□□□ -1.96
VPS50-219ENST00000495039 ACEP12821 1306 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 A0A0U1RQK1 487 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 FAM170AA1A519 330 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 MAGEB16A2A368 324 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 ZNF320A2RRD8 509 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 CCDC162PA2VCL2 907 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 TRAFD1O14545 582 aaPredicted RBP2.8□□□□□ -1.96
VPS50-219ENST00000495039 INPP4BO15327 924 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 SLC7A4O43246 635 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 SNAP91O60641 907 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms