RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 M0QX08 132 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 RTCAO00442 366 aaKnown RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 NDC80O14777 642 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 CPLX1O14810 134 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 LIN7AO14910 233 aaPredicted RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 SLC22A2O15244 555 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 HDAC3O15379 428 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 FIBPO43427 364 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 MGRN1O60291 552 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 N4BP1O75113 896 aaKnown RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 DDHD2O94830 711 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 UFL1O94874 794 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 AP2A2O94973 939 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 OXSR1O95747 527 aaPredicted RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 BCL10O95999 233 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 RAF1P04049 648 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 GSTT2P0CG29 244 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 GSTT2BP0CG30 244 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 GOLGA8HP0CJ92 632 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC166P0CW27 439 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 KRT5P13647 590 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 TYMPP19971 482 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 S100A1P23297 94 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 ACSL1P33121 698 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 EVI2BP34910 448 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 HOXD13P35453 343 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 MAGEA11P43364 429 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 RPL21P46778 160 aaKnown RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 HAAOP46952 286 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 SLC6A12P48065 614 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 CSRP3P50461 194 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 GPC3P51654 580 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 LUMP51884 338 aaPredicted RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 PLTPP55058 493 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 CCL23P55773 120 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 B2MP61769 119 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 KRT83P78385 493 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 DR1Q01658 176 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 RALGDSQ12967 914 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 GRAPQ13588 217 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 GNA13Q14344 377 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 FCN2Q15485 313 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 SLC1A5Q15758 541 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 STK11Q15831 433 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 LPAL2Q16609 132 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 CCL14Q16627 93 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 ARMC4Q5T2S8 1044 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 GRTP1Q5TC63 336 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 FAM205BPQ63HN1 556 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 PWWP2BQ6NUJ5 590 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 FAAP20Q6NZ36 180 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 FIGLAQ6QHK4 219 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 C16orf54Q6UWD8 224 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 LINGO4Q6UY18 593 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF600Q6ZNG1 722 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 TMPRSS11FQ6ZWK6 438 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 BTN2A1Q7KYR7 527 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 AACSQ86V21 672 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 KBTBD6Q86V97 674 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 ERICH1Q86X53 443 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF611Q8N823 705 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 DBF4BQ8NFT6 615 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 OR5M8Q8NGP6 311 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 GOT1L1Q8NHS2 421 aaPredicted RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 CDC26Q8NHZ8 85 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 PRPF31Q8WWY3 499 aaKnown RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 LPGAT1Q92604 370 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 SLAMF9Q96A28 289 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC127Q96BQ5 260 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 PTERQ96BW5 349 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 MRPL38Q96DV4 380 aaKnown RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 C8orf76Q96K31 380 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 SFXN2Q96NB2 322 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 MS4A10Q96PG2 267 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 MTMR9Q96QG7 549 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 TGS1Q96RS0 853 aaKnown RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 NDNQ99608 321 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 CGREF1Q99674 301 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 SIKE1Q9BRV8 207 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 BTBD10Q9BSF8 475 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 C16orf70Q9BSU1 422 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 NUP58Q9BVL2 599 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 MRPL9Q9BYD2 267 aaKnown RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 MRPL1Q9BYD6 325 aaKnown RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 NDEL1Q9GZM8 345 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 TRPV6Q9H1D0 765 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 SNX25Q9H3E2 840 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 TPK1Q9H3S4 243 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 OPA3Q9H6K4 179 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 TBC1D17Q9HA65 648 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC177Q9NQR7 707 aaPredicted RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 SH3GLB2Q9NR46 395 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 FGF21Q9NSA1 209 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 INTS9Q9NV88 658 aaKnown RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 OSER1Q9NX31 292 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 NSMCE4AQ9NXX6 385 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 KLHL8Q9P2G9 620 aaPredicted RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 CACNG5Q9UF02 275 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 TBC1D29Q9UFV1 150 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 HMGXB4Q9UGU5 601 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms