RNA–Protein interactions for RNA: ENST00000489111.1

USP11-211, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 516 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-211ENST00000489111 BTNL2Q9UIR0 455 aa9.5□□□□□ -0.89
USP11-211ENST00000489111 ATXN7L1Q9ULK2 861 aaPredicted RBP9.5□□□□□ -0.89
USP11-211ENST00000489111 VPS4AQ9UN37 437 aa9.5□□□□□ -0.89
USP11-211ENST00000489111 EXO1Q9UQ84 846 aaKnown RBP9.5□□□□□ -0.89
USP11-211ENST00000489111 ENTPD4Q9Y227 616 aa9.5□□□□□ -0.89
USP11-211ENST00000489111 BTBD3Q9Y2F9 522 aa9.5□□□□□ -0.89
USP11-211ENST00000489111 AP3M1Q9Y2T2 418 aa9.5□□□□□ -0.89
USP11-211ENST00000489111 ASB4Q9Y574 426 aa9.5□□□□□ -0.89
USP11-211ENST00000489111 ANKRD12Q6UB98 2062 aa9.5□□□□□ -0.89
USP11-211ENST00000489111 FANCMQ8IYD8 2048 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 A0A1W2PR48 441 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 A0A1W2PRB8 838 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 C1orf226A1L170 272 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 A8MUI8 341 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 TMEM150CB9EJG8 249 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 NME4O00746 187 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 HCRTR1O43613 425 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 GALR3O60755 368 aaPredicted RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 OR2B3O76000 313 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 LDOC1O95751 146 aaPredicted RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 GSNP06396 782 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 ABCB1P08183 1280 aaPredicted RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 ANKRD34CP0C6C1 535 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 ZNF806P0C7X5 589 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 CKMT2P17540 419 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 NELFEP18615 380 aaKnown RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 TCN1P20061 433 aaPredicted RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 CPN2P22792 545 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 SOAT1P35610 550 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 HNRNPFP52597 415 aaKnown RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 WNT3P56703 355 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 EEFSECP57772 596 aaKnown RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 MTPNP58546 118 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 TNFRSF17Q02223 184 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 CFHR1Q03591 330 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 FLOT2Q14254 428 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 KCNAB1Q14722 419 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 GRM7Q14831 915 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 KPNB1Q14974 876 aaKnown RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 SF3A2Q15428 464 aaKnown RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 CLPPQ16740 277 aaPredicted RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 MUM1Q2TAK8 710 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 PRTGQ2VWP7 1150 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 LRIF1Q5T3J3 769 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 GARNL3Q5VVW2 1013 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 NANOGP8Q6NSW7 305 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 ZNF621Q6ZSS3 439 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 SLC15A3Q8IY34 581 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 GPR135Q8IZ08 494 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 CLECL1Q8IZS7 167 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 D2HGDHQ8N465 521 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 TRIML2Q8N7C3 387 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 OR4D9Q8NGE8 314 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 ZFP28Q8NHY6 868 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 RHBDD1Q8TEB9 315 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 TMEM125Q96AQ2 219 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 CIDECQ96AQ7 238 aaPredicted RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 MIEF2Q96C03 454 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 ZBED6CLQ96FA7 236 aaPredicted RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 SLC41A2Q96JW4 573 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 ZNF285Q96NJ3 590 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 ANKRD27Q96NW4 1050 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 BBS4Q96RK4 519 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 GFM1Q96RP9 751 aaKnown RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 MAPKAP1Q9BPZ7 522 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 KCTD14Q9BQ13 255 aaPredicted RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 ECSITQ9BQ95 431 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 THUMPD3Q9BV44 507 aaKnown RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 EDEM2Q9BV94 578 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 TRIM15Q9C019 465 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 ZNF768Q9H5H4 540 aaKnown RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 DENND2DQ9H6A0 471 aaPredicted RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 NANOGQ9H9S0 305 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 LYRM4Q9HD34 91 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 CMTM6Q9NX76 183 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 SLAMF8Q9P0V8 285 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 NCDNQ9UBB6 729 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 UTS2RQ9UKP6 389 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 PACSIN3Q9UKS6 424 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 PSME2Q9UL46 239 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 CLCA2Q9UQC9 943 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 MRPS2Q9Y399 296 aaKnown RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 NAALAD2Q9Y3Q0 740 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 ATG4BQ9Y4P1 393 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 PCDHA9Q9Y5H5 950 aa9.49□□□□□ -0.89
USP11-211ENST00000489111 TNRC6BQ9UPQ9 1833 aaKnown RBP9.49□□□□□ -0.89
USP11-211ENST00000489111 HYKKA2RU49 373 aa9.48□□□□□ -0.89
USP11-211ENST00000489111 PRORSD1PA6NEY8 169 aa9.48□□□□□ -0.89
USP11-211ENST00000489111 GLOD5A6NK44 160 aa9.48□□□□□ -0.89
USP11-211ENST00000489111 EVPLLA8MZ36 301 aa9.48□□□□□ -0.89
USP11-211ENST00000489111 PROM1O43490 865 aa9.48□□□□□ -0.89
USP11-211ENST00000489111 RDH16O75452 317 aa9.48□□□□□ -0.89
USP11-211ENST00000489111 C6orf47O95873 294 aa9.48□□□□□ -0.89
USP11-211ENST00000489111 SMIM10L1P0DMW3 83 aa9.48□□□□□ -0.89
USP11-211ENST00000489111 HSD17B1P14061 328 aa9.48□□□□□ -0.89
USP11-211ENST00000489111 PPIBP23284 216 aaKnown RBP9.48□□□□□ -0.89
USP11-211ENST00000489111 CDKN2CP42773 168 aa9.48□□□□□ -0.89
USP11-211ENST00000489111 AVPR1BP47901 424 aa9.48□□□□□ -0.89
USP11-211ENST00000489111 GABRA4P48169 554 aa9.48□□□□□ -0.89
USP11-211ENST00000489111 MANFP55145 182 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms