RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 SAP18O00422 153 aaKnown RBP13.4□□□□□ -0.26
BRCA1-218ENST00000489037 OR7A17O14581 309 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 CDH16O75309 829 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 GLRA3O75311 464 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 SUPT7LO94864 414 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 TBX6O95947 436 aaPredicted RBP13.4□□□□□ -0.26
BRCA1-218ENST00000489037 SHBGP04278 402 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 CPN2P22792 545 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 ATP5F1P24539 256 aaPredicted RBP13.4□□□□□ -0.26
BRCA1-218ENST00000489037 SOX11P35716 441 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 SLCO1A2P46721 670 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 CCT5P48643 541 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 CD97P48960 835 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 ARFIP1P53367 373 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 SLC26A5P58743 744 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 RPS13P62277 151 aaKnown RBP13.4□□□□□ -0.26
BRCA1-218ENST00000489037 HERVK_113P63132 956 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 IFFO1Q0D2I5 559 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 STX4Q12846 297 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 ZNF169Q14929 603 aaPredicted RBP13.4□□□□□ -0.26
BRCA1-218ENST00000489037 MEP1AQ16819 746 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 SLC5A8Q8N695 610 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 HAS2Q92819 552 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 MIB2Q96AX9 1013 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 CCDC126Q96EE4 140 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 CDK15Q96Q40 435 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 SERPINI1Q99574 410 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 ERVK-6Q9BXR3 956 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.4□□□□□ -0.26
BRCA1-218ENST00000489037 ELOVL6Q9H5J4 265 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 NECTIN3Q9NQS3 549 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 MS4A12Q9NXJ0 267 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 PLAAQ9Y263 795 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 STK38LQ9Y2H1 464 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 SVILO95425 2214 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 SHANK1Q9Y566 2161 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 TLDC2A0PJX2 215 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 SAGE2PA6NJ88 616 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 A8MUA0 341 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 RTCAO00442 366 aaKnown RBP13.39□□□□□ -0.27
BRCA1-218ENST00000489037 CTNSO60931 367 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 IFNA16P05015 189 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 RPS17P08708 135 aaKnown RBP13.39□□□□□ -0.27
BRCA1-218ENST00000489037 TLX1P31314 330 aaPredicted RBP13.39□□□□□ -0.27
BRCA1-218ENST00000489037 HSD17B3P37058 310 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 VSNL1P62760 191 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 CLCQ05315 142 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 SLAMF1Q13291 335 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 CUL3Q13618 768 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 RASA2Q15283 850 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 FRG2Q64ET8 278 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 B3GNTL1Q67FW5 361 aaPredicted RBP13.39□□□□□ -0.27
BRCA1-218ENST00000489037 EMBQ6PCB8 327 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 CYP20A1Q6UW02 462 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 UBE3DQ7Z6J8 389 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 CISD2Q8N5K1 135 aaKnown RBP13.39□□□□□ -0.27
BRCA1-218ENST00000489037 Q8NA96 180 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 OR4F6Q8NGB9 312 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 OR52B6Q8NGF0 335 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 OR1N1Q8NGS0 311 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 ZNF483Q8TF39 744 aaPredicted RBP13.39□□□□□ -0.27
BRCA1-218ENST00000489037 MTFMTQ96DP5 389 aaKnown RBP13.39□□□□□ -0.27
BRCA1-218ENST00000489037 NSUN5Q96P11 429 aaKnown RBP13.39□□□□□ -0.27
BRCA1-218ENST00000489037 FRG2BQ96QU4 278 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 C1QTNF3Q9BXJ4 246 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 PNO1Q9NRX1 252 aaKnown RBP13.39□□□□□ -0.27
BRCA1-218ENST00000489037 AGPAT4Q9NRZ5 378 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 PLA2G3Q9NZ20 509 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 AHSPQ9NZD4 102 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 PHF11Q9UIL8 331 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 FBXW2Q9UKT8 454 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 GRID1Q9ULK0 1009 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 SNX6Q9UNH7 406 aa13.39□□□□□ -0.27
BRCA1-218ENST00000489037 COPG1Q9Y678 874 aaKnown RBP13.39□□□□□ -0.27
BRCA1-218ENST00000489037 IGKV3D-11A0A0A0MRZ8 115 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 TRAV17A0A0B4J275 112 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 A0A1W2PPM1 405 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 CYR61O00622 381 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 SCELO95171 688 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 MLYCDO95822 493 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 SBK3P0C264 359 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 MYL2P10916 166 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 TNNI3P19429 210 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 IMPDH1P20839 514 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 NEK2P51955 445 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 CDH13P55290 713 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 SERTAD2Q14140 314 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 CCDC153Q494R4 210 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 GGTA1PQ4G0N0 100 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 ZNF678Q5SXM1 525 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 H3F3CQ6NXT2 135 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 WDR93Q6P2C0 686 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 ZNF793Q6ZN11 406 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 CUZD1Q86UP6 607 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 SCUBE1Q8IWY4 988 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 TMEM132CQ8N3T6 1108 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 RIBC1Q8N443 379 aaPredicted RBP13.38□□□□□ -0.27
BRCA1-218ENST00000489037 RNF175Q8N4F7 328 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 TMEM151AQ8N4L1 468 aa13.38□□□□□ -0.27
BRCA1-218ENST00000489037 CCDC63Q8NA47 563 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms