RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 HSH2DQ96JZ2 352 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 POLR2J3Q9H1A7 115 aaKnown RBP10.6□□□□□ -0.71
HDAC6-228ENST00000486227 REEP4Q9H6H4 257 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 SMURF2Q9HAU4 748 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 FZD3Q9NPG1 666 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 ALKBH4Q9NXW9 302 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 OR1A2Q9Y585 309 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 PCDHB3Q9Y5E6 796 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 COL4A5P29400 1685 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 F11P03951 625 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 RPS3P23396 243 aaKnown RBP eCLIP10.59□□□□□ -0.71
HDAC6-228ENST00000486227 HTR1EP28566 365 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 PCSK6P29122 969 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 HOXC13P31276 330 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 GRIK2Q13002 908 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 JPH3Q8WXH2 748 aaPredicted RBP10.59□□□□□ -0.71
HDAC6-228ENST00000486227 PHOX2BQ99453 314 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 SLC12A9Q9BXP2 914 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 KCNH6Q9H252 994 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 SSNA1O43805 119 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 POLR2CP19387 275 aaPredicted RBP10.59□□□□□ -0.71
HDAC6-228ENST00000486227 IL12BP29460 328 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 ALDH3B2P48448 385 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 SMU1Q2TAY7 513 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 SYCE2Q6PIF2 218 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 TEX26Q8N6G2 289 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 PIGXQ8TBF5 258 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 RAB8BQ92930 207 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 RHBDF1Q96CC6 855 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 ZNF689Q96CS4 500 aaPredicted RBP10.59□□□□□ -0.71
HDAC6-228ENST00000486227 PAK1IP1Q9NWT1 392 aaPredicted RBP10.59□□□□□ -0.71
HDAC6-228ENST00000486227 P2RX2Q9UBL9 471 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 RNF6Q9Y252 685 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 TCRBV3S1A0A5B6 114 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 CASKO14936 926 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 LATO43561 262 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 SYPP08247 313 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 FGF4P08620 206 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 CAPN3P20807 821 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 PTGS2P35354 604 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 PIK3CBP42338 1070 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 INHBCP55103 352 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 APOFQ13790 326 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 DDI2Q5TDH0 399 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 NATD1Q8N6N6 113 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 LINC01599Q8WXQ3 324 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 ART5Q96L15 291 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 JSRP1Q96MG2 331 aaPredicted RBP10.59□□□□□ -0.71
HDAC6-228ENST00000486227 LHPPQ9H008 270 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 TVP23BQ9NYZ1 205 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 DNMT3BQ9UBC3 853 aaKnown RBP10.59□□□□□ -0.71
HDAC6-228ENST00000486227 SEMA4FO95754 770 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 ALPPP05187 535 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 DCKP27707 260 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 TIA1P31483 386 aaKnown RBP eCLIP10.59□□□□□ -0.71
HDAC6-228ENST00000486227 STAT5AP42229 794 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 RPL34P49207 117 aaKnown RBP10.59□□□□□ -0.71
HDAC6-228ENST00000486227 OR4D2P58180 307 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 RPP38P78345 283 aaKnown RBP10.59□□□□□ -0.71
HDAC6-228ENST00000486227 COL9A2Q14055 689 aaPredicted RBP10.59□□□□□ -0.71
HDAC6-228ENST00000486227 RTL4Q6ZR62 310 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 RNF130Q86XS8 419 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 ISG20Q96AZ6 181 aaKnown RBP10.59□□□□□ -0.71
HDAC6-228ENST00000486227 CRELD1Q96HD1 420 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 FARSBQ9NSD9 589 aaKnown RBP10.59□□□□□ -0.71
HDAC6-228ENST00000486227 ZNF224Q9NZL3 707 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 PHF11Q9UIL8 331 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 SCML1Q9UN30 329 aa10.59□□□□□ -0.71
HDAC6-228ENST00000486227 MRPS7Q9Y2R9 242 aaKnown RBP10.59□□□□□ -0.71
HDAC6-228ENST00000486227 FABP12A6NFH5 140 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 OR6C70A6NIJ9 312 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 DUXAA6NLW8 204 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 RTCAO00442 366 aaKnown RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 JUNDP17535 347 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 CCKBRP32239 447 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 RORCP51449 518 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 LASP1Q14847 261 aaKnown RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 GPR68Q15743 365 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 COQ5Q5HYK3 327 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 CCDC28AQ8IWP9 274 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 HUS1BQ8NHY5 278 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 S100A13Q99584 98 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 MRPL39Q9NYK5 338 aaKnown RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 CCL26Q9Y258 94 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 PRSS21Q9Y6M0 314 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 C7orf72A4D263 438 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 FAM221BA6H8Z2 402 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 MROH6A6NGR9 719 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 FAM170BA6NMN3 283 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 WASH3PC4AMC7 463 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 CAPN5O15484 640 aaPredicted RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 BCAS1O75363 584 aaPredicted RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 EEDO75530 441 aaKnown RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 IFNGP01579 166 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 SHMT2P34897 504 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 ZNF234Q14588 700 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 LHX8Q68G74 356 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 KRT74Q7RTS7 529 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 RANBP3LQ86VV4 465 aaPredicted RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms