RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 RBP1P09455 135 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 TNNI3P19429 210 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 EEF1DP29692 281 aaKnown RBP16.52■□□□□ 0.24
COL6A1-204ENST00000486023 SSR2P43308 183 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 ID2Q02363 134 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 STX4Q12846 297 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 RCN2Q14257 317 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 NAA30Q147X3 362 aaPredicted RBP16.52■□□□□ 0.24
COL6A1-204ENST00000486023 OR1C1Q15619 314 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 TECRLQ5HYJ1 363 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 GRHL2Q6ISB3 625 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 RPUSD3Q6P087 351 aaKnown RBP16.52■□□□□ 0.24
COL6A1-204ENST00000486023 LAS2Q8IYD9 372 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 ST6GALNAC3Q8NDV1 305 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 SRFBP1Q8NEF9 429 aaKnown RBP16.52■□□□□ 0.24
COL6A1-204ENST00000486023 HUS1BQ8NHY5 278 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 ELP5Q8TE02 316 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 DCAKDQ8WVC6 231 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 CMTM7Q96FZ5 175 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 CDK15Q96Q40 435 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 BARD1Q99728 777 aaKnown RBP16.52■□□□□ 0.24
COL6A1-204ENST00000486023 FUT8Q9BYC5 575 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 XPR1Q9UBH6 696 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 RNF11Q9Y3C5 154 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 TNPO3Q9Y5L0 923 aaKnown RBP16.52■□□□□ 0.24
COL6A1-204ENST00000486023 USP9XQ93008 2570 aaPredicted RBP16.52■□□□□ 0.23
COL6A1-204ENST00000486023 SCN2AQ99250 2005 aa16.52■□□□□ 0.23
COL6A1-204ENST00000486023 SHANK1Q9Y566 2161 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 IGKV3D-11A0A0A0MRZ8 115 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 TGFBR3LH3BV60 316 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 SMIM24O75264 130 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 SNRPAP09012 282 aaKnown RBP16.51■□□□□ 0.23
COL6A1-204ENST00000486023 FAM153BP0C7A2 387 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 RNF224P0DH78 156 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 EDN3P14138 238 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 ATP5A1P25705 553 aaKnown RBP16.51■□□□□ 0.23
COL6A1-204ENST00000486023 NEK2P51955 445 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 HSD17B7P56937 341 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 RPS13P62277 151 aaKnown RBP16.51■□□□□ 0.23
COL6A1-204ENST00000486023 FAM153CQ494X1 144 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 TMEM35AQ53FP2 167 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 LGSNQ5TDP6 509 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 KHDRBS2Q5VWX1 349 aaKnown RBP16.51■□□□□ 0.23
COL6A1-204ENST00000486023 LIPJQ5W064 366 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 ZNF793Q6ZN11 406 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 ZNF595Q8IYB9 648 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 GSPT2Q8IYD1 628 aaKnown RBP16.51■□□□□ 0.23
COL6A1-204ENST00000486023 ACOT4Q8N9L9 421 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 C5orf34Q96MH7 638 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 TBCDQ9BTW9 1192 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 ALOXE3Q9BYJ1 711 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 ROGDIQ9GZN7 287 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 RNF32Q9H0A6 362 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 NOL11Q9H8H0 719 aaKnown RBP16.51■□□□□ 0.23
COL6A1-204ENST00000486023 LIN28AQ9H9Z2 209 aaKnown RBP16.51■□□□□ 0.23
COL6A1-204ENST00000486023 ERRFI1Q9UJM3 462 aaPredicted RBP16.51■□□□□ 0.23
COL6A1-204ENST00000486023 SPACA6W5XKT8 324 aa16.51■□□□□ 0.23
COL6A1-204ENST00000486023 CYSRT1A8MQ03 144 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 CYR61O00622 381 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 KLK8O60259 260 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 LDB3O75112 727 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 CD46P15529 392 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 HIST1H1TP22492 207 aaPredicted RBP16.5■□□□□ 0.23
COL6A1-204ENST00000486023 CPN2P22792 545 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 CNTFP26441 200 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 TPP2P29144 1249 aaPredicted RBP16.5■□□□□ 0.23
COL6A1-204ENST00000486023 CLCN2P51788 898 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 KCNK10P57789 538 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 SLAMF1Q13291 335 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 ESPL1Q14674 2120 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 PCBP2Q15366 365 aaKnown RBP eCLIP16.5■□□□□ 0.235e-7■■□□□ 14
COL6A1-204ENST00000486023 MAPKAPK3Q16644 382 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 DEPDC1Q5TB30 811 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 ZNF468Q5VIY5 522 aaPredicted RBP16.5■□□□□ 0.23
COL6A1-204ENST00000486023 HIST2H2BCQ6DN03 193 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 OR4C11Q6IEV9 310 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 RPS27LQ71UM5 84 aaKnown RBP16.5■□□□□ 0.23
COL6A1-204ENST00000486023 SCUBE1Q8IWY4 988 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 OR4N5Q8IXE1 308 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 LRRN4CLQ8ND94 238 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 NFAM1Q8NET5 270 aaPredicted RBP16.5■□□□□ 0.23
COL6A1-204ENST00000486023 B3GNT7Q8NFL0 401 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 ADAMTS18Q8TE60 1221 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 NCLNQ969V3 563 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 RGMAQ96B86 450 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 CENPKQ9BS16 269 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 DMRT3Q9NQL9 472 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 LRFN1Q9P244 771 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 PCDHGA11Q9Y5H2 935 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 CLCA3PQ9Y6N3 262 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 DOPEY2Q9Y3R5 2298 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 PTPN13Q12923 2485 aa16.5■□□□□ 0.23
COL6A1-204ENST00000486023 CCDC189A1A4V9 331 aa16.49■□□□□ 0.23
COL6A1-204ENST00000486023 E2F3O00716 465 aa16.49■□□□□ 0.23
COL6A1-204ENST00000486023 RIPK2O43353 540 aa16.49■□□□□ 0.23
COL6A1-204ENST00000486023 CTNSO60931 367 aa16.49■□□□□ 0.23
COL6A1-204ENST00000486023 TSPAN8P19075 237 aa16.49■□□□□ 0.23
COL6A1-204ENST00000486023 SERPINB1P30740 379 aa16.49■□□□□ 0.23
COL6A1-204ENST00000486023 CCNG1P51959 295 aa16.49■□□□□ 0.23
COL6A1-204ENST00000486023 PHEXP78562 749 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms