RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 CACNA1DQ01668 2161 aa6.57□□□□□ -1.36
VPS50-218ENST00000485994 NBPF19A0A087WUL8 3843 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 A0A087WUV0 522 aaPredicted RBP6.56□□□□□ -1.36
VPS50-218ENST00000485994 OR5H15A6NDH6 313 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 OR2W5A6NFC9 320 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 SAGE2PA6NJ88 616 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 C4orf51C9J302 202 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 H0YIV9 168 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 UBXN8O00124 270 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 PSMD12O00232 456 aaPredicted RBP6.56□□□□□ -1.36
VPS50-218ENST00000485994 FOXE1O00358 373 aaPredicted RBP6.56□□□□□ -1.36
VPS50-218ENST00000485994 ERI3O43414 337 aaKnown RBP6.56□□□□□ -1.36
VPS50-218ENST00000485994 B3GALT2O43825 422 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 INHBAP08476 426 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 SNRPAP09012 282 aaKnown RBP6.56□□□□□ -1.36
VPS50-218ENST00000485994 EDN3P14138 238 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 PTX3P26022 381 aaPredicted RBP6.56□□□□□ -1.36
VPS50-218ENST00000485994 HNRNPH1P31943 449 aaKnown RBP6.56□□□□□ -1.36
VPS50-218ENST00000485994 MSH2P43246 934 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 PIK3CGP48736 1102 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 SERPINB8P50452 374 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 MTTPP55157 894 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 LIM2P55344 173 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 ARG2P78540 354 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 BTG2P78543 158 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 CUL3Q13618 768 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 TSNAXIP1Q2TAA8 658 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 MFSD4BQ5TF39 518 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 MED27Q6P2C8 311 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 LINC00696Q6ZRV3 163 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 TAOK1Q7L7X3 1001 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 UBE3DQ7Z6J8 389 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 RETREG3Q86VR2 466 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 RPS19BP1Q86WX3 136 aaKnown RBP6.56□□□□□ -1.36
VPS50-218ENST00000485994 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.56□□□□□ -1.36
VPS50-218ENST00000485994 SIRT6Q8N6T7 355 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 HORMAD2Q8N7B1 307 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 BCORP1Q8N888 145 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 ZNF511Q8NB15 262 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 APCDD1LQ8NCL9 501 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 MYRIPQ8NFW9 859 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 SUN3Q8TAQ9 357 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 GRHL3Q8TE85 626 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 DCAKDQ8WVC6 231 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 KCTD4Q8WVF5 259 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 IFT81Q8WYA0 676 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.56□□□□□ -1.36
VPS50-218ENST00000485994 ZNF592Q92610 1267 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 ESAMQ96AP7 390 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 TRIM44Q96DX7 344 aaPredicted RBP6.56□□□□□ -1.36
VPS50-218ENST00000485994 MTBPQ96DY7 904 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 SLX1AQ9BQ83 275 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 C1QTNF3Q9BXJ4 246 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 MS4A8Q9BY19 250 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 UNKQ9C0B0 810 aaKnown RBP6.56□□□□□ -1.36
VPS50-218ENST00000485994 KCNK13Q9HB14 408 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 NECTIN3Q9NQS3 549 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 MS4A12Q9NXJ0 267 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 VTI1BQ9UEU0 232 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 NTNG1Q9Y2I2 539 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 ASB1Q9Y576 335 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 IKBKGQ9Y6K9 419 aa6.56□□□□□ -1.36
VPS50-218ENST00000485994 IGHV3-20A0A0C4DH32 117 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 ASPDHA6ND91 283 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 ANKUB1A6NFN9 424 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 ZNF860A6NHJ4 632 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 SUPT3HB4E1H0 165 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 FAM227AF5H4B4 570 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 STX16-NPEPL1H3BU86 382 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 E2F3O00716 465 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 STX16O14662 325 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 PRAMEF2O60811 474 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 B4GALT2O60909 372 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 SUPT3HO75486 399 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 SEC24DO94855 1032 aaPredicted RBP6.55□□□□□ -1.36
VPS50-218ENST00000485994 RASAL1O95294 804 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 B3GALT4O96024 378 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 CRYABP02511 175 aaKnown RBP6.55□□□□□ -1.36
VPS50-218ENST00000485994 CELA2AP08217 269 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 STSP08842 583 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 HIST1H1TP22492 207 aaPredicted RBP6.55□□□□□ -1.36
VPS50-218ENST00000485994 ATP5A1P25705 553 aaKnown RBP6.55□□□□□ -1.36
VPS50-218ENST00000485994 TRHRP34981 398 aaPredicted RBP6.55□□□□□ -1.36
VPS50-218ENST00000485994 CD96P40200 585 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 UQCRFS1P47985 274 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 CLCN2P51788 898 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 PLA2G16P53816 162 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 MLF1P58340 268 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 TAS2R50P59544 299 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 IRF9Q00978 393 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 SERTAD2Q14140 314 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 PFKFB4Q16877 469 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.55□□□□□ -1.36
VPS50-218ENST00000485994 EIF2S3LQ2VIR3 472 aaKnown RBP6.55□□□□□ -1.36
VPS50-218ENST00000485994 AP5B1Q2VPB7 878 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 KRTCAP3Q53RY4 240 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 PRR30Q53SZ7 412 aaPredicted RBP6.55□□□□□ -1.36
VPS50-218ENST00000485994 FBXO48Q5FWF7 155 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 TECRLQ5HYJ1 363 aa6.55□□□□□ -1.36
VPS50-218ENST00000485994 KHDRBS2Q5VWX1 349 aaKnown RBP6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms