RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 RAB38P57729 211 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 DNAJB13P59910 316 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 SKP1P63208 163 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 AIMP2Q13155 320 aaKnown RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 SLAMF1Q13291 335 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 CUL3Q13618 768 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 NSDHLQ15738 373 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 TMEM35AQ53FP2 167 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 SWT1Q5T5J6 900 aaKnown RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 LIPMQ5VYY2 423 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 OR4C11Q6IEV9 310 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 TCTN3Q6NUS6 607 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 NIPAL1Q6NVV3 410 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 SCIMPQ6UWF3 145 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 ATG14Q6ZNE5 492 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 GPRIN3Q6ZVF9 776 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 NDUFAF7Q7L592 441 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 CPEB2Q7Z5Q1 589 aaKnown RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 CLNKQ7Z7G1 428 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 CLEC1AQ8NC01 280 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 RDH11Q8TC12 318 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 AGAP11Q8TF27 550 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 SELENOMQ8WWX9 145 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 METTL21AQ8WXB1 218 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 UCN3Q969E3 161 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 RGMAQ96B86 450 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 THOC3Q96J01 351 aaKnown RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 IMMP1LQ96LU5 166 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 PTCHD1Q96NR3 888 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 SMC6Q96SB8 1091 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 TBCDQ9BTW9 1192 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 GATA5Q9BWX5 397 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 NPLQ9BXD5 320 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 ZNF700Q9H0M5 742 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 CENPHQ9H3R5 247 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 ELOVL6Q9H5J4 265 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 COPS7BQ9H9Q2 264 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 CLK4Q9HAZ1 481 aaKnown RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 MID1IP1Q9NPA3 183 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 GPR83Q9NYM4 423 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 FBXW2Q9UKT8 454 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 TIMM22Q9Y584 194 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 PIEZO2Q9H5I5 2752 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 A0A088AWK7 358 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 A0A0A6YYD5 115 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 WASHC1A8K0Z3 465 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 PSMD12O00232 456 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-208ENST00000476739 MANBAO00462 879 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 TMPRSS11DO60235 418 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 PRMT3O60678 531 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 ERLIN1O75477 346 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 MLYCDO95822 493 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 ZNF10P21506 573 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-208ENST00000476739 JAK1P23458 1154 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 SERPINB3P29508 390 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 PPP2R1BP30154 601 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 ARRB2P32121 409 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 HPDP32754 393 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-208ENST00000476739 ETV4P43268 484 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 CD97P48960 835 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 RAP1GDS1P52306 607 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 SOX8P57073 446 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 PHEXP78562 749 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 TGM3Q08188 693 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 LCP2Q13094 533 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 IFT88Q13099 833 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 MPP2Q14168 576 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 MYBPC3Q14896 1274 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 AP5B1Q2VPB7 878 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 LACTB2Q53H82 288 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-208ENST00000476739 SFT2D3Q587I9 215 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 CES4AQ5XG92 561 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 C18orf63Q68DL7 685 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 LRIG3Q6UXM1 1119 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 QSOX2Q6ZRP7 698 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 FRMD7Q6ZUT3 714 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 ASB18Q6ZVZ8 466 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 SCUBE1Q8IWY4 988 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 SRFBP1Q8NEF9 429 aaKnown RBP9.1□□□□□ -0.95
HDAC3-208ENST00000476739 PSMF1Q92530 271 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 CCDC126Q96EE4 140 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 SMAD5Q99717 465 aaKnown RBP9.1□□□□□ -0.95
HDAC3-208ENST00000476739 MRPL1Q9BYD6 325 aaKnown RBP9.1□□□□□ -0.95
HDAC3-208ENST00000476739 ROGDIQ9GZN7 287 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 IQCGQ9H095 443 aaKnown RBP9.1□□□□□ -0.95
HDAC3-208ENST00000476739 LYRM4Q9HD34 91 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 MED4Q9NPJ6 270 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 PRTFDC1Q9NRG1 225 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 PPT2Q9UMR5 302 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 ATG4BQ9Y4P1 393 aa9.1□□□□□ -0.95
HDAC3-208ENST00000476739 PCDHGA9Q9Y5G4 932 aaKnown RBP9.1□□□□□ -0.95
HDAC3-208ENST00000476739 SPENQ96T58 3664 aaKnown RBP9.09□□□□□ -0.95
HDAC3-208ENST00000476739 COL6A6A6NMZ7 2263 aa9.09□□□□□ -0.95
HDAC3-208ENST00000476739 TCRBV16S1A1N1A0A5B0 115 aa9.09□□□□□ -0.95
HDAC3-208ENST00000476739 ARHGAP10A1A4S6 786 aa9.09□□□□□ -0.95
HDAC3-208ENST00000476739 EIF4E1BA6NMX2 242 aaKnown RBP9.09□□□□□ -0.95
HDAC3-208ENST00000476739 A8MUA0 341 aa9.09□□□□□ -0.95
HDAC3-208ENST00000476739 TRIM13O60858 407 aa9.09□□□□□ -0.95
HDAC3-208ENST00000476739 LDB3O75112 727 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms