RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 REXO4Q9GZR2 422 aaKnown RBP11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ADAP2Q9NPF8 381 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 DEPPQ9NTK1 212 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 RNF14Q9UBS8 474 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 YARS2Q9Y2Z4 477 aaKnown RBP11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SNX24Q9Y343 169 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ANKRD17O75179 2603 aaKnown RBP11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 NINQ8N4C6 2090 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 A0A1B0GTH9 108 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SYNDIG1LA6NDD5 238 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 FAM159BA6NKW6 160 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CLDN4O14493 209 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 B3GALT2O43825 422 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 STK16O75716 305 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ZFAND5O76080 213 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SCELO95171 688 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CCDC166P0CW27 439 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 COX6B1P14854 86 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ABOP16442 354 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 IGFBP2P18065 325 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SSTR1P30872 391 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 NR0B1P51843 470 aaKnown RBP11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PLA2G16P53816 162 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 MTTPP55157 894 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 DOC2AQ14183 400 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 NAA30Q147X3 362 aaPredicted RBP11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ELAVL1Q15717 326 aaKnown RBP11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 EMC4Q5J8M3 183 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SULT1C3Q6IMI6 304 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ZNF793Q6ZN11 406 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 GPSM1Q86YR5 675 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CYP4Z2PQ8N1L4 340 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PIP4P2Q8N4L2 257 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 FAM57AQ8TBR7 257 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 KIAA1191Q96A73 305 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ESAMQ96AP7 390 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PTCD3Q96EY7 689 aaKnown RBP11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 C14orf79Q96F83 325 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 FAR2Q96K12 515 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CSF3RQ99062 836 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 RBBP8Q99708 897 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CPNE1Q99829 537 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CAB39LQ9H9S4 337 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PNO1Q9NRX1 252 aaKnown RBP11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 DNAJC11Q9NVH1 559 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 WHRNQ9P202 907 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 MYOTQ9UBF9 498 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 FREM3P0C091 2139 aa11.39□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ZFHX3Q15911 3703 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 A0A088AWK7 358 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TCRBV9S1A1TA0A576 114 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PINLYPA6NC86 204 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ANKDD1BA6NHY2 528 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 NCF1BA6NI72 391 aaPredicted RBP11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 NCF1CA8MVU1 366 aaPredicted RBP11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PRRG2O14669 202 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 EIF3HO15372 352 aaKnown RBP eCLIP11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PHGDHO43175 533 aaKnown RBP11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 HS6ST1O60243 411 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ZNF354AO60765 605 aaPredicted RBP11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SNRPB2P08579 225 aaKnown RBP11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 NCF1P14598 390 aaPredicted RBP11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ZNF10P21506 573 aaPredicted RBP11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CERS1P27544 350 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 HPDP32754 393 aaPredicted RBP11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PTGS2P35354 604 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 HSPA7P48741 367 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SSR4P51571 173 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 GPX6P59796 221 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ATP6V0D1P61421 351 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 GNG11P61952 73 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TFF3Q07654 80 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 EFTUD2Q15029 972 aaKnown RBP eCLIP11.38□□□□□ -0.595e-14■■□□□ 14.1
MSH5-SAPCD1-205ENST00000476085 FBXO48Q5FWF7 155 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TRIM40Q6P9F5 258 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 C3P1Q6ZMU1 363 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 C16orf47Q6ZP98 133 aaPredicted RBP11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 FRA10AC1Q70Z53 315 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ISCA2Q86U28 154 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 GPALPP1Q8IXQ4 340 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 LAS2Q8IYD9 372 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TMEM132CQ8N3T6 1108 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TMEM156Q8N614 296 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 MORN4Q8NDC4 146 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PSD4Q8NDX1 1056 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 OR52N2Q8NGI0 321 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 OR8K3Q8NH51 312 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ZNF473Q8WTR7 871 aaKnown RBP11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PYROXD1Q8WU10 500 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 F2RL3Q96RI0 385 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 KRT12Q99456 494 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 NAPGQ99747 312 aaPredicted RBP11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ERP44Q9BS26 406 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 MS4A8Q9BY19 250 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ZDHHC11Q9H8X9 412 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CNOT10Q9H9A5 744 aaKnown RBP11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 LYRM4Q9HD34 91 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 GRHL1Q9NZI5 618 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 FBXW2Q9UKT8 454 aa11.38□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 C2CD3Q4AC94 2353 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms