RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 BCORP1Q8N888 145 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 PTGR2Q8N8N7 351 aaPredicted RBP16.78■□□□□ 0.28
UPF3A-203ENST00000474056 SRFBP1Q8NEF9 429 aaKnown RBP16.78■□□□□ 0.28
UPF3A-203ENST00000474056 HUS1BQ8NHY5 278 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 SUN3Q8TAQ9 357 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 SCYL1Q96KG9 808 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 SIGLEC12Q96PQ1 595 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 TBCDQ9BTW9 1192 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 OR51B5Q9H339 312 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 CDCP1Q9H5V8 836 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 ACTR8Q9H981 624 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 PNO1Q9NRX1 252 aaKnown RBP16.78■□□□□ 0.28
UPF3A-203ENST00000474056 MRPS33Q9Y291 106 aaKnown RBP16.78■□□□□ 0.28
UPF3A-203ENST00000474056 EML6Q6ZMW3 1958 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 MYOCOSA0A1B0GUC4 107 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 CYSRT1A8MQ03 144 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 SAP18O00422 153 aaKnown RBP16.77■□□□□ 0.28
UPF3A-203ENST00000474056 CLDN4O14493 209 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 PRAMEF2O60811 474 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 MYO1DO94832 1006 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 ABHD2P08910 425 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 RBP1P09455 135 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 FAM153BP0C7A2 387 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 EDN3P14138 238 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 CNTFP26441 200 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 SERPINB1P30740 379 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 SRSF11Q05519 484 aaKnown RBP16.77■□□□□ 0.28
UPF3A-203ENST00000474056 TSNAXIP1Q2TAA8 658 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 FAM153CQ494X1 144 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 ZNF766Q5HY98 468 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 LIPJQ5W064 366 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 ZNF324BQ6AW86 544 aaPredicted RBP16.77■□□□□ 0.28
UPF3A-203ENST00000474056 MYO7BQ6PIF6 2116 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 ZNF595Q8IYB9 648 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 GSPT2Q8IYD1 628 aaKnown RBP16.77■□□□□ 0.28
UPF3A-203ENST00000474056 ACOT4Q8N9L9 421 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 APCDD1LQ8NCL9 501 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 PHF21BQ96EK2 531 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 CMTM7Q96FZ5 175 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 MTERF1Q99551 399 aaKnown RBP16.77■□□□□ 0.28
UPF3A-203ENST00000474056 MAPKAP1Q9BPZ7 522 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 SLX1AQ9BQ83 275 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 SORBS1Q9BX66 1292 aaKnown RBP16.77■□□□□ 0.28
UPF3A-203ENST00000474056 ROGDIQ9GZN7 287 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 IPPKQ9H8X2 491 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 DMRT3Q9NQL9 472 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 OLAHQ9NV23 265 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 KCMF1Q9P0J7 381 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 ABI3Q9P2A4 366 aa16.77■□□□□ 0.28
UPF3A-203ENST00000474056 TNPO3Q9Y5L0 923 aaKnown RBP16.77■□□□□ 0.28
UPF3A-203ENST00000474056 RIPK2O43353 540 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 UGDHO60701 494 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 SCELO95171 688 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 SNRPAP09012 282 aaKnown RBP16.76■□□□□ 0.27
UPF3A-203ENST00000474056 HIST1H1TP22492 207 aaPredicted RBP16.76■□□□□ 0.27
UPF3A-203ENST00000474056 EEF1DP29692 281 aaKnown RBP16.76■□□□□ 0.27
UPF3A-203ENST00000474056 CD96P40200 585 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 SSR2P43308 183 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 TDGF1P3P51864 188 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 PMP22Q01453 160 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 OR1C1Q15619 314 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 CPSF6Q16630 551 aaKnown RBP eCLIP16.76■□□□□ 0.272e-7■■■□□ 16.2
UPF3A-203ENST00000474056 TMEM35AQ53FP2 167 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 DEPDC1Q5TB30 811 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 KHDRBS2Q5VWX1 349 aaKnown RBP16.76■□□□□ 0.27
UPF3A-203ENST00000474056 CHSY3Q70JA7 882 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 TRMT10CQ7L0Y3 403 aaKnown RBP16.76■□□□□ 0.27
UPF3A-203ENST00000474056 RPS19BP1Q86WX3 136 aaKnown RBP16.76■□□□□ 0.27
UPF3A-203ENST00000474056 LGI4Q8N135 537 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 MDS2Q8NDY4 140 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 SSC4DQ8WTU2 575 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 NR4A3Q92570 626 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 PSMG3-AS1Q96PY0 264 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 UTP23Q9BRU9 249 aaKnown RBP16.76■□□□□ 0.27
UPF3A-203ENST00000474056 HES7Q9BYE0 225 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 LYRM4Q9HD34 91 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 ADGRE2Q9UHX3 823 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 ERRFI1Q9UJM3 462 aaPredicted RBP16.76■□□□□ 0.27
UPF3A-203ENST00000474056 ZNF223Q9UK11 482 aaPredicted RBP16.76■□□□□ 0.27
UPF3A-203ENST00000474056 RNF11Q9Y3C5 154 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 PCDHGA11Q9Y5H2 935 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 GTF3C1Q12789 2109 aa16.76■□□□□ 0.27
UPF3A-203ENST00000474056 PLPP1O14494 284 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 RASAL1O95294 804 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 COL6A2P12110 1019 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 PIK3CBP42338 1070 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 PIK3CGP48736 1102 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 MLF1P58340 268 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 RPS13P62277 151 aaKnown RBP16.75■□□□□ 0.27
UPF3A-203ENST00000474056 RCN2Q14257 317 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 TERF2Q15554 542 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 AP5B1Q2VPB7 878 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 ZNF468Q5VIY5 522 aaPredicted RBP16.75■□□□□ 0.27
UPF3A-203ENST00000474056 SPINK14Q6IE38 97 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 METTL2BQ6P1Q9 378 aaKnown RBP16.75■□□□□ 0.27
UPF3A-203ENST00000474056 ADGRD1Q6QNK2 874 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 L3MBTL4Q8NA19 623 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 B3GNT7Q8NFL0 401 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 OR52B6Q8NGF0 335 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 NCLNQ969V3 563 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms