RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CLDN4O14493 209 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 NEURL1O76050 574 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 WISP2O76076 250 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 LIM2P55344 173 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 MLF1P58340 268 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 TGM3Q08188 693 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 TBCCQ15814 346 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 MAPKAPK3Q16644 382 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 UBAP2Q5T6F2 1119 aaKnown RBP14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 SLC25A25Q6KCM7 469 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 CENPLQ8N0S6 344 aaPredicted RBP14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 FAM98AQ8NCA5 519 aaKnown RBP14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 B3GNT7Q8NFL0 401 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 ADAMTS18Q8TE60 1221 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 UBTD2Q8WUN7 234 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 ITLN2Q8WWU7 325 aaPredicted RBP14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 ZNF592Q92610 1267 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 MS4A8Q9BY19 250 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 SNX15Q9NRS6 342 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 NINJ2Q9NZG7 142 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 FBXW2Q9UKT8 454 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 DAPP1Q9UN19 280 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 OTOGQ6ZRI0 2925 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 DNAJC13O75165 2243 aa14.68□□□□□ -0.06
CCDC88B-205ENST00000472524 A0A087X1B8 175 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 RTCAO00442 366 aaKnown RBP14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 FCHO1O14526 889 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 SLC25A12O75746 678 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 C2P06681 752 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 SP1P08047 785 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 PHBP35232 272 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 CYB561P49447 251 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 CLCN2P51788 898 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 HSD17B7P56937 341 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 ALDH6A1Q02252 535 aaKnown RBP14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 RBPJQ06330 500 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 DDX39BQ13838 428 aaKnown RBP14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 WHAMMP3Q1A5X7 153 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 MED27Q6P2C8 311 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 ZNF793Q6ZN11 406 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 MCEMP1Q8IX19 187 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 ZNF595Q8IYB9 648 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 TEX9Q8N6V9 391 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 APCDD1LQ8NCL9 501 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 ZNF473Q8WTR7 871 aaKnown RBP14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 UBE2E3Q969T4 207 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 NCLNQ969V3 563 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 FRMD6Q96NE9 622 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 KCNC2Q96PR1 638 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 PRDM7Q9NQW5 492 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 MTRF1LQ9UGC7 380 aaKnown RBP14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 ANGPTL3Q9Y5C1 460 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 CLDN16Q9Y5I7 305 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 CACNA1CQ13936 2221 aa14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 NCOA6Q14686 2063 aaPredicted RBP14.67□□□□□ -0.06
CCDC88B-205ENST00000472524 ZNF407Q9C0G0 2248 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 HMX2A2RU54 273 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 ASPDHA6ND91 283 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 SYCE1LA8MT33 242 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 NPIPA5E9PKD4 350 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 SAP18O00422 153 aaKnown RBP14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 CYR61O00622 381 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 TGFB1P01137 390 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 IFNA16P05015 189 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 MTHFD2P13995 350 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 GFAPP14136 432 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 CASP2P42575 452 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 SERPINB8P50452 374 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 RCN2Q14257 317 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 TERF2Q15554 542 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 FAM83EQ2M2I3 478 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 UBE3DQ7Z6J8 389 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 MYLK4Q86YV6 388 aaPredicted RBP14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 RNF175Q8N4F7 328 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 SREK1Q8WXA9 508 aaKnown RBP14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 TMEM125Q96AQ2 219 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 VMP1Q96GC9 406 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 MAPKAP1Q9BPZ7 522 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 ROGDIQ9GZN7 287 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 ADAP2Q9NPF8 381 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 SUCOQ9UBS9 1254 aaKnown RBP14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 ZNF223Q9UK11 482 aaPredicted RBP14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 NPIPA1Q9UND3 350 aa14.66□□□□□ -0.06
CCDC88B-205ENST00000472524 APCP25054 2843 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 A0A096LPK6 155 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 LRRC14BA6NHZ5 514 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 CCL21O00585 134 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 NME2P1O60361 137 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 ACSL3O95573 720 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 MLYCDO95822 493 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 EPB42P16452 691 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 POU3F2P20265 443 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 NME2P22392 152 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 ATP5A1P25705 553 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 ELAVL4P26378 380 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 TYK2P29597 1187 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 SSR2P43308 183 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 HLCSP50747 726 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 E2F2Q14209 437 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms