RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 COX15Q7KZN9 410 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 EXOC3L1Q86VI1 746 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 TRPV3Q8NET8 790 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 OR52B6Q8NGF0 335 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 NT5CQ8TCD5 201 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 TCP10LQ8TDR4 215 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 UBE2E3Q969T4 207 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 ZBTB9Q96C00 473 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 MVB12AQ96EY5 273 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 SEC16BQ96JE7 1060 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 CNDP1Q96KN2 507 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 NSUN5Q96P11 429 aaKnown RBP11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 STMN4Q9H169 189 aaPredicted RBP11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 NOL11Q9H8H0 719 aaKnown RBP11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 ACTR8Q9H981 624 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 SSU72Q9NP77 194 aaKnown RBP11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 SEMA3GQ9NS98 782 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 SLC17A7Q9P2U7 560 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 ZNF490Q9ULM2 529 aaPredicted RBP11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 ACTL7BQ9Y614 415 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 RTTNQ86VV8 2226 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 ACANP16112 2415 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 ANKDD1BA6NHY2 528 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 GOLGA6L10A6NI86 522 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 PRPF4O43172 522 aaKnown RBP eCLIP11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 SUPT7LO94864 414 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 SERPINA6P08185 405 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 CA7P43166 264 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 CCNG1P51959 295 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 CDH13P55290 713 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 DNAJB13P59910 316 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 NAA20P61599 178 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 OCA2Q04671 838 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 CLCQ05315 142 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 Q0VFX4 171 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 TRAF3Q13114 568 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 FAM53BQ14153 422 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 PCLAFQ15004 111 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.22□□□□□ -0.618e-6■■□□□ 12.6
SQSTM1-206ENST00000466342 UNC50Q53HI1 259 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 AGAP7PQ5VUJ5 663 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 GFRALQ6UXV0 394 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 RPS27LQ71UM5 84 aaKnown RBP11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 HDXQ7Z353 690 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 MYLK4Q86YV6 388 aaPredicted RBP11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 TGIF2LYQ8IUE0 185 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 LAS2Q8IYD9 372 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 DTWD1Q8N5C7 304 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 L3MBTL4Q8NA19 623 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 KCT2Q8NC54 265 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 ARMC2Q8NEN0 867 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 STT3BQ8TCJ2 826 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 CREB3L4Q8TEY5 395 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 ATP6V1E2Q96A05 226 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 AGAP4Q96P64 663 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 FAM111AQ96PZ2 611 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 MACROD1Q9BQ69 325 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 NTMT1Q9BV86 223 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 SLC6A16Q9GZN6 736 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 DRC3Q9H069 523 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 RHBGQ9H310 441 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 TMBIM4Q9HC24 238 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 SEMA4BQ9NPR2 832 aaPredicted RBP11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 ZNF282Q9UDV7 671 aaPredicted RBP11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 MRPS2Q9Y399 296 aaKnown RBP11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 MAU2Q9Y6X3 613 aa11.22□□□□□ -0.61
SQSTM1-206ENST00000466342 IGLV3-12A0A075B6K2 115 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 URADA6NGE7 173 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 TMEM200CA6NKL6 621 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 H0YIV9 168 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 SOCS6O14544 535 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 FOXS1O43638 330 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 CLEC3AO75596 197 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 CLDN9O95484 217 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 CLDN14O95500 239 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 OTCP00480 354 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 SERPIND1P05546 499 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 ZGLP1P0C6A0 271 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 SERPINB1P30740 379 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 ARL1P40616 181 aaPredicted RBP11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 SMSP52788 366 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 FOXL2P58012 376 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 SNRPNP63162 240 aaKnown RBP11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 ADORA2A-AS1P86434 159 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 HYAL2Q12891 473 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 RBBP7Q16576 425 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 GGTA1PQ4G0N0 100 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 LIPMQ5VYY2 423 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 ADNP2Q6IQ32 1131 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 KIRREL2Q6UWL6 708 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 VN1R5Q7Z5H4 357 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 TMEM151BQ8IW70 566 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 METTL27Q8N6F8 245 aaPredicted RBP11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 OR7G3Q8NG95 312 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 ZCCHC10Q8TBK6 192 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 CCT6BQ92526 530 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 NR4A3Q92570 626 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 MIEF2Q96C03 454 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 MAGEB10Q96LZ2 347 aaPredicted RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms