RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 FTH1P19P0C7X4 201 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 PIM1P11309 404 aaPredicted RBP10.39□□□□□ -0.75
SCN9A-205ENST00000454569 PRPS2P11908 318 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 EFNA1P20827 205 aaPredicted RBP10.39□□□□□ -0.75
SCN9A-205ENST00000454569 MRPL19P49406 292 aaKnown RBP10.39□□□□□ -0.75
SCN9A-205ENST00000454569 HNRNPFP52597 415 aaKnown RBP10.39□□□□□ -0.75
SCN9A-205ENST00000454569 MAT1AQ00266 395 aaKnown RBP10.39□□□□□ -0.75
SCN9A-205ENST00000454569 C2orf80Q0P641 193 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 MAD2L1Q13257 205 aaPredicted RBP10.39□□□□□ -0.75
SCN9A-205ENST00000454569 RPS6KA2Q15349 733 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 ISXQ2M1V0 245 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 MPEG1Q2M385 716 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 LACTB2Q53H82 288 aaPredicted RBP10.39□□□□□ -0.75
SCN9A-205ENST00000454569 FAM71E1Q6IPT2 247 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 PWWP2BQ6NUJ5 590 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 RBM44Q6ZP01 1051 aaKnown RBP10.39□□□□□ -0.75
SCN9A-205ENST00000454569 NUDT13Q86X67 352 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 SNX32Q86XE0 403 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 ZNF511Q8NB15 262 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 METTL2AQ96IZ6 378 aaKnown RBP10.39□□□□□ -0.75
SCN9A-205ENST00000454569 KCNC2Q96PR1 638 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 CSF3RQ99062 836 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 ACTR5Q9H9F9 607 aaPredicted RBP10.39□□□□□ -0.75
SCN9A-205ENST00000454569 AKIRIN1Q9H9L7 192 aaPredicted RBP10.39□□□□□ -0.75
SCN9A-205ENST00000454569 ENAMQ9NRM1 1142 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 IRAK4Q9NWZ3 460 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 SLC22A7Q9Y694 548 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 CAPN7Q9Y6W3 813 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 OR2W5A6NFC9 320 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 GLOD5A6NK44 160 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 NR5A2O00482 541 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 PGRMC2O15173 223 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 MYO1DO94832 1006 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 MT-CO3P00414 261 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 C1QCP02747 245 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 FAM58BPP0C7Q3 252 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 MSL3P1P0C860 447 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 COX4I1P13073 169 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 ACPPP15309 386 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 ZNF28P17035 718 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 CCKBRP32239 447 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 MAPK12P53778 367 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 ITGA1P56199 1179 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 WNT3P56703 355 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 FOXL2P58012 376 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 ZNF763Q0D2J5 394 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 CLPPQ16740 277 aaPredicted RBP10.39□□□□□ -0.75
SCN9A-205ENST00000454569 LINC01559Q495D7 138 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 VPS26BQ4G0F5 336 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 SPANXN4Q5MJ08 99 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 MANEAQ5SRI9 462 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 TMTC4Q5T4D3 741 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 HES3Q5TGS1 186 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 TTLL10Q6ZVT0 673 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 CA13Q8N1Q1 262 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 N4BP2L2Q92802 583 aaPredicted RBP10.39□□□□□ -0.75
SCN9A-205ENST00000454569 DPY30Q9C005 99 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 CLMPQ9H6B4 373 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 MYNNQ9NPC7 610 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 CUTCQ9NTM9 273 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 TXLNGQ9NUQ3 528 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 AHSPQ9NZD4 102 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 ZIM2Q9NZV7 527 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 HCN3Q9P1Z3 774 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 ADAM29Q9UKF5 820 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 RRP15Q9Y3B9 282 aaKnown RBP10.39□□□□□ -0.75
SCN9A-205ENST00000454569 PCDHGA1Q9Y5H4 931 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 MAU2Q9Y6X3 613 aa10.39□□□□□ -0.75
SCN9A-205ENST00000454569 MYOCOSA0A1B0GUC4 107 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 FAM149AA5PLN7 773 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 ANKRD65E5RJM6 399 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 PROM1O43490 865 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 FOXD2O60548 495 aaPredicted RBP10.38□□□□□ -0.75
SCN9A-205ENST00000454569 CSO75390 466 aaKnown RBP10.38□□□□□ -0.75
SCN9A-205ENST00000454569 NTRK1P04629 796 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 FURINP09958 794 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 LAMP1P11279 417 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 JAK1P23458 1154 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 MAPK1P28482 360 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 CSTF2P33240 577 aaKnown RBP eCLIP10.38□□□□□ -0.75
SCN9A-205ENST00000454569 OR1D4P47884 311 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 POLR2JP52435 117 aaKnown RBP10.38□□□□□ -0.75
SCN9A-205ENST00000454569 EFNA3P52797 238 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 MTTPP55157 894 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 LIM2P55344 173 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 STX1BP61266 288 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 SIM1P81133 766 aaPredicted RBP10.38□□□□□ -0.75
SCN9A-205ENST00000454569 PLIN5Q00G26 463 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 E2F1Q01094 437 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 DUSP2Q05923 314 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 BNIP1Q12981 228 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 ILKQ13418 452 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 TRA2AQ13595 282 aaKnown RBP eCLIP10.38□□□□□ -0.75
SCN9A-205ENST00000454569 ERV3-1Q14264 604 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 TLR1Q15399 786 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 MUM1Q2TAK8 710 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 ZNF750Q32MQ0 723 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 TCTE1Q5JU00 501 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 PAGE3Q5JUK9 113 aa10.38□□□□□ -0.75
SCN9A-205ENST00000454569 C1orf189Q5VU69 101 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms