RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 GBAP04062 536 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 JUNP05412 331 aaKnown RBP12.31□□□□□ -0.44
VPS33A-202ENST00000451053 RAB40ALP0C0E4 278 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 WT1P19544 449 aaPredicted RBP12.31□□□□□ -0.44
VPS33A-202ENST00000451053 ZNF10P21506 573 aaPredicted RBP12.31□□□□□ -0.44
VPS33A-202ENST00000451053 XCR1P46094 333 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 ARFIP1P53367 373 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 SF3A3Q12874 501 aaKnown RBP eCLIP12.31□□□□□ -0.44
VPS33A-202ENST00000451053 NKG7Q16617 165 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 SMU1Q2TAY7 513 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 SLC9B1Q4ZJI4 515 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 ATP6AP1LQ52LC2 224 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 VWA2Q5GFL6 755 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 NXNQ6DKJ4 435 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 NIPAL1Q6NVV3 410 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 SHISA6Q6ZSJ9 500 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 COMMD6Q7Z4G1 85 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 NUDT13Q86X67 352 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 SPACA3Q8IXA5 215 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 PRSS58Q8IYP2 241 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 METTL4Q8N3J2 472 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 C1orf52Q8N6N3 182 aaKnown RBP12.31□□□□□ -0.44
VPS33A-202ENST00000451053 OR51Q1Q8NH59 317 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 CHTF18Q8WVB6 975 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 KIAA1143Q96AT1 154 aaPredicted RBP12.31□□□□□ -0.44
VPS33A-202ENST00000451053 TUBGCP3Q96CW5 907 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 APIPQ96GX9 242 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 PEX11GQ96HA9 241 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 METTL2AQ96IZ6 378 aaKnown RBP12.31□□□□□ -0.44
VPS33A-202ENST00000451053 PPP1R36Q96LQ0 422 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 EBF4Q9BQW3 602 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 RBCK1Q9BYM8 510 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 DPH1Q9BZG8 443 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 ROGDIQ9GZN7 287 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 SLC26A1Q9H2B4 701 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 WDR55Q9H6Y2 383 aaPredicted RBP12.31□□□□□ -0.44
VPS33A-202ENST00000451053 MKKSQ9NPJ1 570 aaPredicted RBP12.31□□□□□ -0.44
VPS33A-202ENST00000451053 HEY2Q9UBP5 337 aa12.31□□□□□ -0.44
VPS33A-202ENST00000451053 ZNF282Q9UDV7 671 aaPredicted RBP12.31□□□□□ -0.44
VPS33A-202ENST00000451053 FARSAQ9Y285 508 aaKnown RBP12.31□□□□□ -0.44
VPS33A-202ENST00000451053 A0A0A6YYD5 115 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 VSTM2BA6NLU5 285 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 NPIPB8E9PQR5 432 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 FAM227AF5H4B4 570 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 TMPRSS11DO60235 418 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 KLF7O75840 302 aaPredicted RBP12.3□□□□□ -0.44
VPS33A-202ENST00000451053 RSL1D1O76021 490 aaKnown RBP12.3□□□□□ -0.44
VPS33A-202ENST00000451053 ALBP02768 609 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 PCSK2P16519 638 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 LBPP18428 481 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 PRPH2P23942 346 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 PTPN4P29074 926 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 TPP2P29144 1249 aaPredicted RBP12.3□□□□□ -0.44
VPS33A-202ENST00000451053 EPHA3P29320 983 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 TSFMP43897 325 aaKnown RBP12.3□□□□□ -0.44
VPS33A-202ENST00000451053 LIM2P55344 173 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 RPS15P62841 145 aaKnown RBP12.3□□□□□ -0.44
VPS33A-202ENST00000451053 OCA2Q04671 838 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 MAD2L1Q13257 205 aaPredicted RBP12.3□□□□□ -0.44
VPS33A-202ENST00000451053 ERV3-1Q14264 604 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 NR6A1Q15406 480 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 LSM12Q3MHD2 195 aaKnown RBP12.3□□□□□ -0.44
VPS33A-202ENST00000451053 SPDYAQ5MJ70 313 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 Q6ZSR9 355 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 SPATA19Q7Z5L4 167 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 PARP9Q8IXQ6 854 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 ZCCHC7Q8N3Z6 543 aaKnown RBP12.3□□□□□ -0.44
VPS33A-202ENST00000451053 KDF1Q8NAX2 398 aaPredicted RBP12.3□□□□□ -0.44
VPS33A-202ENST00000451053 STT3BQ8TCJ2 826 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 C3orf30Q96M34 536 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 SPSB2Q99619 263 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 MAPKAP1Q9BPZ7 522 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 NPLQ9BXD5 320 aaPredicted RBP12.3□□□□□ -0.44
VPS33A-202ENST00000451053 GPR87Q9BY21 358 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 ACTL8Q9H568 366 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 SOX17Q9H6I2 414 aaPredicted RBP12.3□□□□□ -0.44
VPS33A-202ENST00000451053 DDX31Q9H8H2 851 aaKnown RBP12.3□□□□□ -0.44
VPS33A-202ENST00000451053 WDR54Q9H977 334 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 CLK4Q9HAZ1 481 aaKnown RBP12.3□□□□□ -0.44
VPS33A-202ENST00000451053 AHSPQ9NZD4 102 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 GIMAP2Q9UG22 337 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 FBXW2Q9UKT8 454 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 TCFL5Q9UL49 500 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 PTRH2Q9Y3E5 179 aaKnown RBP12.3□□□□□ -0.44
VPS33A-202ENST00000451053 PCDHGA6Q9Y5G7 932 aa12.3□□□□□ -0.44
VPS33A-202ENST00000451053 AHCTF1Q8WYP5 2266 aa12.29□□□□□ -0.44
VPS33A-202ENST00000451053 ATP6AP2A0A1C7CYW4 349 aa12.29□□□□□ -0.44
VPS33A-202ENST00000451053 RRP8O43159 456 aaKnown RBP12.29□□□□□ -0.44
VPS33A-202ENST00000451053 EFSO43281 561 aa12.29□□□□□ -0.44
VPS33A-202ENST00000451053 ATP6AP2O75787 350 aa12.29□□□□□ -0.44
VPS33A-202ENST00000451053 BMP10O95393 424 aa12.29□□□□□ -0.44
VPS33A-202ENST00000451053 KLK1P06870 262 aa12.29□□□□□ -0.44
VPS33A-202ENST00000451053 UMODP07911 640 aa12.29□□□□□ -0.44
VPS33A-202ENST00000451053 ZGLP1P0C6A0 271 aa12.29□□□□□ -0.44
VPS33A-202ENST00000451053 RNH1P13489 461 aaKnown RBP12.29□□□□□ -0.44
VPS33A-202ENST00000451053 ITPKBP27987 946 aa12.29□□□□□ -0.44
VPS33A-202ENST00000451053 MAPK1P28482 360 aa12.29□□□□□ -0.44
VPS33A-202ENST00000451053 EFNA3P52797 238 aa12.29□□□□□ -0.44
VPS33A-202ENST00000451053 HNRNPH2P55795 449 aaKnown RBP12.29□□□□□ -0.44
VPS33A-202ENST00000451053 RAB38P57729 211 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms