RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 RAP2BP61225 183 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 HSDL1Q3SXM5 330 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 FOXB2Q5VYV0 432 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 LCN8Q6JVE9 175 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 ARL6IP6Q8N6S5 226 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 ZNF248Q8NDW4 579 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 SEMA3CQ99985 751 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 POTEKPQ9BYX7 375 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 HOXD1Q9GZZ0 328 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 ACSS2Q9NR19 701 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 NAALAD2Q9Y3Q0 740 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 ADAM18Q9Y3Q7 739 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 HEMK1Q9Y5R4 338 aaPredicted RBP12.82□□□□□ -0.36
USP40-208ENST00000450966 CYTIPO60759 359 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 SRSF11Q05519 484 aaKnown RBP12.82□□□□□ -0.36
USP40-208ENST00000450966 MBTD1Q05BQ5 628 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 DCAF12L1Q5VU92 463 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 KCTD9Q7L273 389 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 ARL14Q8N4G2 192 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 KREMEN2Q8NCW0 462 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 GLIS3Q8NEA6 775 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 SEMA6DQ8NFY4 1073 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 MYRFLQ96LU7 910 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 ZNF395Q9H8N7 513 aaPredicted RBP12.82□□□□□ -0.36
USP40-208ENST00000450966 EMC7Q9NPA0 242 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 ZNF358Q9NW07 568 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 MRPS33Q9Y291 106 aaKnown RBP12.82□□□□□ -0.36
USP40-208ENST00000450966 AKAP12Q02952 1782 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 HSBP1L1C9JCN9 74 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 PRKACGP22612 351 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 KLF1Q13351 362 aaPredicted RBP12.82□□□□□ -0.36
USP40-208ENST00000450966 RNF130Q86XS8 419 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 OR4D10Q8NGI6 311 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 NDC1Q9BTX1 674 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 PRDM12Q9H4Q4 367 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 DUS2Q9NX74 493 aaKnown RBP12.82□□□□□ -0.36
USP40-208ENST00000450966 IKZF2Q9UKS7 526 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 CREG1O75629 220 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 SLC25A12O75746 678 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 RBBP9O75884 186 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 PRKCGP05129 697 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 SNRNP70P08621 437 aaKnown RBP12.82□□□□□ -0.36
USP40-208ENST00000450966 PGAM2P15259 253 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 PCSK6P29122 969 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 SMSP52788 366 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 NRG3P56975 720 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 FLYWCH1Q4VC44 716 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 TAPT1Q6NXT6 567 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 RNF44Q7L0R7 432 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 FAM124AQ86V42 546 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 LYSMD2Q8IV50 215 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 RAVER1Q8IY67 606 aaKnown RBP12.82□□□□□ -0.36
USP40-208ENST00000450966 PCDHGA7Q9Y5G6 932 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 FLRT2O43155 660 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 TYRP14679 529 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 LPOP22079 712 aaPredicted RBP12.82□□□□□ -0.36
USP40-208ENST00000450966 CAMLGP49069 296 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 DNASE1L1P49184 302 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 ZNF616Q08AN1 781 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 FAM174BQ3ZCQ3 159 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 GSG1LQ6UXU4 331 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 PRSS42Q7Z5A4 293 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 TSPYL5Q86VY4 417 aaPredicted RBP12.82□□□□□ -0.36
USP40-208ENST00000450966 ZNF561Q8N587 486 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 SLC7A6Q92536 515 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 RNF186Q9NXI6 227 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 SNX10Q9Y5X0 201 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 BHMG1C9JSJ3 638 aaPredicted RBP12.81□□□□□ -0.36
USP40-208ENST00000450966 UBFD1O14562 309 aaKnown RBP12.81□□□□□ -0.36
USP40-208ENST00000450966 FADS1O60427 444 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 FGF1P05230 155 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 MAPK3P27361 379 aaPredicted RBP12.81□□□□□ -0.36
USP40-208ENST00000450966 G0S2P27469 103 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 RACK1P63244 317 aaKnown RBP12.81□□□□□ -0.36
USP40-208ENST00000450966 TARBP2Q15633 366 aaKnown RBP12.81□□□□□ -0.36
USP40-208ENST00000450966 NDUFA9Q16795 377 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 SLC36A3Q495N2 470 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 TANGO2Q6ICL3 276 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 OR13F1Q8NGS4 319 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 TM9SF4Q92544 642 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 OR14A2Q96R54 314 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 KXD1Q9BQD3 176 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 AKTIPQ9H8T0 292 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 AOC2O75106 756 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 SCGB1D1O95968 90 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 BLKP51451 505 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 BAMBIQ13145 260 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 SPHARQ15513 63 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 CPSF6Q16630 551 aaKnown RBP eCLIP12.81□□□□□ -0.36
USP40-208ENST00000450966 FAM171BQ6P995 826 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 TMEM151AQ8N4L1 468 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 EXOSC8Q96B26 276 aaKnown RBP12.81□□□□□ -0.36
USP40-208ENST00000450966 NUDT4Q9NZJ9 180 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 ZDHHC2Q9UIJ5 367 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 AGO1Q9UL18 857 aaKnown RBP12.81□□□□□ -0.36
USP40-208ENST00000450966 HES2Q9Y543 173 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 MRPL42Q9Y6G3 142 aaKnown RBP12.81□□□□□ -0.36
USP40-208ENST00000450966 PCLAFQ15004 111 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 DCST2Q5T1A1 773 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 FAM69AQ5T7M9 428 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms