RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 C1orf109Q9NX04 203 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 ADAM21Q9UKJ8 722 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 POLR3HQ9Y535 204 aaPredicted RBP16.29■□□□□ 0.2
LIME1-202ENST00000444951 SCN3AQ9NY46 2000 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 SPENQ96T58 3664 aaKnown RBP16.28■□□□□ 0.2
LIME1-202ENST00000444951 A0A088AWK7 358 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 A0A0G2JND7 137 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 ARHGAP10A1A4S6 786 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 GMNCA6NCL1 334 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 CYSRT1A8MQ03 144 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 STMND1H3BQB6 276 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 ZNF195O14628 629 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 LSM1O15116 133 aaKnown RBP16.28■□□□□ 0.2
LIME1-202ENST00000444951 B3GALT2O43825 422 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 SEMA3DO95025 777 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 ITGB2P05107 769 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 ZNF10P21506 573 aaPredicted RBP16.28■□□□□ 0.2
LIME1-202ENST00000444951 FBLP22087 321 aaKnown RBP16.28■□□□□ 0.2
LIME1-202ENST00000444951 BSGP35613 385 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 MTTPP55157 894 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 ABHD18Q0P651 414 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 FAM53BQ14153 422 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 SYT16Q17RD7 645 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 SPIN4Q56A73 249 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 CCNYL2Q5T2Q4 361 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 CGB2Q6NT52 195 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 FAM199XQ6PEV8 388 aaPredicted RBP16.28■□□□□ 0.2
LIME1-202ENST00000444951 CYP20A1Q6UW02 462 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 C6orf15Q6UXA7 325 aaPredicted RBP16.28■□□□□ 0.2
LIME1-202ENST00000444951 RIPOR1Q6ZS17 1223 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 RNF165Q6ZSG1 346 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 PAGE2Q7Z2X7 111 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 NUDT13Q86X67 352 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 SHISA5Q8N114 240 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 ACOT4Q8N9L9 421 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 CDC26Q8NHZ8 85 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 PPP3R2Q96LZ3 170 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 QRFPRQ96P65 431 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 C1orf50Q9BV19 199 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 AKIRIN1Q9H9L7 192 aaPredicted RBP16.28■□□□□ 0.2
LIME1-202ENST00000444951 ZNF304Q9HCX3 659 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 ENAMQ9NRM1 1142 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 FBXW2Q9UKT8 454 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 G3BP2Q9UN86 482 aaKnown RBP16.28■□□□□ 0.2
LIME1-202ENST00000444951 CDC14AQ9UNH5 594 aa16.28■□□□□ 0.2
LIME1-202ENST00000444951 TMEM184BQ9Y519 407 aaPredicted RBP16.28■□□□□ 0.2
LIME1-202ENST00000444951 GNG14A0A1W2PPG7 69 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 MEN1O00255 615 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 PCDH7O60245 1069 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 MYO1DO94832 1006 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 NSA2O95478 260 aaKnown RBP16.27■□□□□ 0.2
LIME1-202ENST00000444951 KLK3P07288 261 aaPredicted RBP16.27■□□□□ 0.2
LIME1-202ENST00000444951 LIFP15018 202 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 ITGAXP20702 1163 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 AGXTP21549 392 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 HIST1H1TP22492 207 aaPredicted RBP16.27■□□□□ 0.2
LIME1-202ENST00000444951 IDH3AP50213 366 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 SKP1P63208 163 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 DCDP81605 110 aaKnown RBP16.27■□□□□ 0.2
LIME1-202ENST00000444951 SLAMF1Q13291 335 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 NKAIN1Q4KMZ8 207 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 RFTN2Q52LD8 501 aaPredicted RBP16.27■□□□□ 0.2
LIME1-202ENST00000444951 LCN10Q6JVE6 187 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 EPGNQ6UW88 154 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 TIPARPQ7Z3E1 657 aaKnown RBP16.27■□□□□ 0.2
LIME1-202ENST00000444951 CPLX4Q7Z7G2 160 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 DSELQ8IZU8 1212 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 FNDC5Q8NAU1 212 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 GBP5Q96PP8 586 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 OR52B2Q96RD2 323 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 SERINC2Q96SA4 455 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 EBF4Q9BQW3 602 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 ARHGAP9Q9BRR9 750 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 ZNF717Q9BY31 904 aaPredicted RBP16.27■□□□□ 0.2
LIME1-202ENST00000444951 RBCK1Q9BYM8 510 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 ROGDIQ9GZN7 287 aa16.27■□□□□ 0.2
LIME1-202ENST00000444951 CHST10O43529 356 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 VPS4BO75351 444 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 DLGAP3O95886 979 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 ANXA4P09525 319 aaPredicted RBP16.26■□□□□ 0.19
LIME1-202ENST00000444951 CCNYL3P0C7X3 344 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 TPP2P29144 1249 aaPredicted RBP16.26■□□□□ 0.19
LIME1-202ENST00000444951 TIA1P31483 386 aaKnown RBP eCLIP16.26■□□□□ 0.19
LIME1-202ENST00000444951 RORAP35398 523 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 MAPK12P53778 367 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 RAE1P78406 368 aaKnown RBP16.26■□□□□ 0.19
LIME1-202ENST00000444951 RUNX2Q13950 521 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 C6orf136Q5SQH8 315 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 MLIPQ5VWP3 458 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 NOXRED1Q6NXP6 359 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 PRMT9Q6P2P2 845 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 ACAD11Q709F0 780 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 EFCAB3Q8N7B9 438 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 PROKR1Q8TCW9 393 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 MVB12AQ96EY5 273 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 PEX11GQ96HA9 241 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 RILPQ96NA2 401 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 TMEM120AQ9BXJ8 343 aa16.26■□□□□ 0.19
LIME1-202ENST00000444951 NSRP1Q9H0G5 558 aaKnown RBP16.26■□□□□ 0.19
LIME1-202ENST00000444951 CHST8Q9H2A9 424 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms