RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 OR2B3O76000 313 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 H6PDO95479 791 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 GNAO1P09471 354 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 HNRNPA1P09651 372 aaKnown RBP eCLIP6.62□□□□□ -1.35
SCN1A-204ENST00000423058 TUBG1P23258 451 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 BDKRB1P46663 353 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 LEPRP48357 1165 aaKnown RBP6.62□□□□□ -1.35
SCN1A-204ENST00000423058 ARSFP54793 590 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 TUBA1BP68363 451 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 WSCD2Q2TBF2 565 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF829Q3KNS6 432 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-204ENST00000423058 BCL2L15Q5TBC7 163 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 NCEH1Q6PIU2 408 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 ADGRD1Q6QNK2 874 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 OLFML1Q6UWY5 402 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 TUBA1AQ71U36 451 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 PM20D2Q8IYS1 436 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 ARL14Q8N4G2 192 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 MFSD8Q8NHS3 518 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 TNFRSF25Q93038 417 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 PTCHD1Q96NR3 888 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 TGM7Q96PF1 710 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 HERPUD2Q9BSE4 406 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 TMEM100Q9NV29 134 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 EPHA6Q9UF33 1036 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 ACAD8Q9UKU7 415 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 A0A1B0GVT2 93 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 ANKRD66B4E2M5 251 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 RRP8O43159 456 aaKnown RBP6.62□□□□□ -1.35
SCN1A-204ENST00000423058 RP2O75695 350 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 RNH1P13489 461 aaKnown RBP6.62□□□□□ -1.35
SCN1A-204ENST00000423058 JUNDP17535 347 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 UQCRC2P22695 453 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 MAGEA3P43357 314 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 CHRNA6Q15825 494 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 TTLL10Q6ZVT0 673 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF598Q86UK7 904 aaKnown RBP6.62□□□□□ -1.35
SCN1A-204ENST00000423058 THAP4Q8WY91 577 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 TMEM80Q96HE8 168 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 WDR92Q96MX6 357 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 UNKLQ9H9P5 680 aaKnown RBP6.62□□□□□ -1.35
SCN1A-204ENST00000423058 HCN4Q9Y3Q4 1203 aa6.62□□□□□ -1.35
SCN1A-204ENST00000423058 FAM155AB1AL88 458 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 KDELR3O43731 214 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 DLX3O60479 287 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 HLA-DPB1P04440 258 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 FOLR3P41439 243 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ISLR2Q6UXK2 745 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 OR5J2Q8NH18 312 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 OR56A3Q8NH54 315 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 TBC1D15Q8TC07 691 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 CD300LFQ8TDQ1 290 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 RELTQ969Z4 430 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 KIAA1191Q96A73 305 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 FBXL18Q96ME1 805 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 HS6ST2Q96MM7 605 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 FCRL5Q96RD9 977 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 VRK1Q99986 396 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 DNAJB4Q9UDY4 337 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 CFAP20Q9Y6A4 193 aaKnown RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SLIT3O75094 1523 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 LOC100509620A0A075B734 347 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 FAM170BA6NMN3 283 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 GRXCR1A8MXD5 290 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 AK1P00568 194 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ADH6P28332 368 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SSTP61278 116 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SRYQ05066 204 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SIRPB2Q5JXA9 342 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 Q6ZVU0 165 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SERINC5Q86VE9 423 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 CBR4Q8N4T8 237 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 LNX1Q8TBB1 728 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 FKBP10Q96AY3 582 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SH3YL1Q96HL8 342 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SCLYQ96I15 445 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ACSS2Q9NR19 701 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 EXOSC1Q9Y3B2 195 aaKnown RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 PMF1-BGLAPU3KQ54 211 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 MST1RQ04912 1400 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 LMO7Q8WWI1 1683 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 PROM1O43490 865 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SSX5O60225 188 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 CSTAP01040 98 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 RAB4AP20338 218 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 IMPDH1P20839 514 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 FRKP42685 505 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SLC18A2Q05940 514 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 NTRK2Q16620 822 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 CARD17Q5XLA6 110 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 REEP3Q6NUK4 255 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ASPGQ86U10 573 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ZSWIM9Q86XI8 627 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 LGI4Q8N135 537 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 OR9A2Q8NGT5 310 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 NFKBIDQ8NI38 313 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 GAB3Q8WWW8 586 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SYT3Q9BQG1 590 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 FETUBQ9UGM5 382 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 LIPT1Q9Y234 373 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms