RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 HPCAL1P37235 193 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 LIM2P55344 173 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 NME5P56597 212 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 RAB15P59190 212 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 SRSF11Q05519 484 aaKnown RBP13.48□□□□□ -0.25
SF3B1-204ENST00000414963 PWWP2BQ6NUJ5 590 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 FOXR1Q6PIV2 292 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 RAB11FIP2Q7L804 512 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 OR8J2Q8NGG1 315 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 CLHC1Q8NHS4 586 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 NSL1Q96IY1 281 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 PRPF18Q99633 342 aaKnown RBP13.48□□□□□ -0.25
SF3B1-204ENST00000414963 MAPKAP1Q9BPZ7 522 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 ZPBPQ9BS86 351 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 SLC25A23Q9BV35 468 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 FAIM2Q9BWQ8 316 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 ARL8BQ9NVJ2 186 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 TEX10Q9NXF1 929 aaPredicted RBP13.48□□□□□ -0.25
SF3B1-204ENST00000414963 SLC39A1Q9NY26 324 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 LOXL2Q9Y4K0 774 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 ATG4BQ9Y4P1 393 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 PCDHA9Q9Y5H5 950 aa13.48□□□□□ -0.25
SF3B1-204ENST00000414963 PTPRZ1P23471 2315 aaPredicted RBP13.48□□□□□ -0.25
SF3B1-204ENST00000414963 CYR61O00622 381 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 CHST10O43529 356 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 AKAP10O43572 662 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 DNAJB6O75190 326 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 SCRG1O75711 98 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 UBOX5O94941 541 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 KCNK5O95279 499 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 TIAF1O95411 115 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 T-ENOLP0DO92 83 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 COX4I1P13073 169 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 DDX5P17844 614 aaKnown RBP13.47□□□□□ -0.25
SF3B1-204ENST00000414963 NOVA1P51513 510 aaKnown RBP13.47□□□□□ -0.25
SF3B1-204ENST00000414963 BNIP1Q12981 228 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 CYLC2Q14093 348 aaPredicted RBP13.47□□□□□ -0.25
SF3B1-204ENST00000414963 DSG2Q14126 1118 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 UGT8Q16880 541 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 NDUFAF5Q5TEU4 345 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 PRAMEF17Q5VTA0 474 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 TTLL10Q6ZVT0 673 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 TMEM126BQ8IUX1 230 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 CA13Q8N1Q1 262 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 NATD1Q8N6N6 113 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 ADAMTS18Q8TE60 1221 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 ADAMTS14Q8WXS8 1223 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 DDA1Q9BW61 102 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 B3GNT4Q9C0J1 378 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 ACTR5Q9H9F9 607 aaPredicted RBP13.47□□□□□ -0.25
SF3B1-204ENST00000414963 APMAPQ9HDC9 416 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 TAGLN3Q9UI15 199 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 FBXW2Q9UKT8 454 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 PCDHGA3Q9Y5H0 932 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 SPACA6W5XKT8 324 aa13.47□□□□□ -0.25
SF3B1-204ENST00000414963 A0A1W2PP18 115 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 C1orf226A1L170 272 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 BLACEA4D250 179 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 ZNF860A6NHJ4 632 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 RDH16O75452 317 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 LRATO95237 230 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 AIFM1O95831 613 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 RNH1P13489 461 aaKnown RBP13.46□□□□□ -0.25
SF3B1-204ENST00000414963 ITGAXP20702 1163 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 IL10P22301 178 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 ALAS2P22557 587 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 TLX1P31314 330 aaPredicted RBP13.46□□□□□ -0.25
SF3B1-204ENST00000414963 BUD31P41223 144 aaPredicted RBP13.46□□□□□ -0.25
SF3B1-204ENST00000414963 MNAT1P51948 309 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 CLDN6P56747 220 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 RAB38P57729 211 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 KCNK10P57789 538 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 MC1RQ01726 317 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 TNFRSF17Q02223 184 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 STX5Q13190 355 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 TLR1Q15399 786 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 FAM174BQ3ZCQ3 159 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 COQ5Q5HYK3 327 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 DCAF12Q5T6F0 453 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 CPTPQ5TA50 214 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 ZNF385CQ66K41 422 aaPredicted RBP13.46□□□□□ -0.25
SF3B1-204ENST00000414963 CEACAM20Q6UY09 585 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 RIPOR1Q6ZS17 1223 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 GK5Q6ZS86 529 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 MSANTD1Q6ZTZ1 278 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 SNX32Q86XE0 403 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 OR5T3Q8NGG3 340 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 WDR36Q8NI36 951 aaKnown RBP13.46□□□□□ -0.25
SF3B1-204ENST00000414963 NUDT8Q8WV74 236 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 GFM2Q969S9 779 aaKnown RBP13.46□□□□□ -0.25
SF3B1-204ENST00000414963 SPDL1Q96EA4 605 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 MMABQ96EY8 250 aaPredicted RBP13.46□□□□□ -0.25
SF3B1-204ENST00000414963 SLC45A3Q96JT2 553 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 LRFN5Q96NI6 719 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 GBP5Q96PP8 586 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 TAAR9Q96RI9 348 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 RTKNQ9BST9 563 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 ASPSCR1Q9BZE9 553 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 BHLHE41Q9C0J9 482 aaPredicted RBP13.46□□□□□ -0.25
SF3B1-204ENST00000414963 TXLNGQ9NUQ3 528 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms