RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 DDX39BQ13838 428 aaKnown RBP17.82■□□□□ 0.44
SF3A1-202ENST00000411423 DEPDC1Q5TB30 811 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 KLC3Q6P597 504 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 IFT20Q8IY31 132 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 ACOT4Q8N9L9 421 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 ST6GALNAC3Q8NDV1 305 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 OR52B6Q8NGF0 335 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 MTERF1Q99551 399 aaKnown RBP17.82■□□□□ 0.44
SF3A1-202ENST00000411423 SLX1AQ9BQ83 275 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 ZNF717Q9BY31 904 aaPredicted RBP17.82■□□□□ 0.44
SF3A1-202ENST00000411423 IPPKQ9H8X2 491 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 DMRT3Q9NQL9 472 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 ANGPTL3Q9Y5C1 460 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 PTPN13Q12923 2485 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 EXOC1LA0A1B0GW35 172 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 GABRR3A8MPY1 467 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 PLPP1O14494 284 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 PRKNO60260 465 aaPredicted RBP17.81■□□□□ 0.44
SF3A1-202ENST00000411423 PRAMEF2O60811 474 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 KRT38O76015 456 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 MYO1DO94832 1006 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 SCELO95171 688 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 HIST1H1TP22492 207 aaPredicted RBP17.81■□□□□ 0.44
SF3A1-202ENST00000411423 MST1P26927 711 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 TPP2P29144 1249 aaPredicted RBP17.81■□□□□ 0.44
SF3A1-202ENST00000411423 GPR143P51810 404 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 HSD17B7P56937 341 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 RPS13P62277 151 aaKnown RBP17.81■□□□□ 0.44
SF3A1-202ENST00000411423 MEP1AQ16819 746 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 KHDRBS2Q5VWX1 349 aaKnown RBP17.81■□□□□ 0.44
SF3A1-202ENST00000411423 LIPJQ5W064 366 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 ZNF227Q86WZ6 799 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 MYLK4Q86YV6 388 aaPredicted RBP17.81■□□□□ 0.44
SF3A1-202ENST00000411423 WDR20Q8TBZ3 569 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 UBE2E3Q969T4 207 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 SCYL1Q96KG9 808 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 KCNC2Q96PR1 638 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 NOL11Q9H8H0 719 aaKnown RBP17.81■□□□□ 0.44
SF3A1-202ENST00000411423 ACTR8Q9H981 624 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 COPS7BQ9H9Q2 264 aaPredicted RBP17.81■□□□□ 0.44
SF3A1-202ENST00000411423 PNO1Q9NRX1 252 aaKnown RBP17.81■□□□□ 0.44
SF3A1-202ENST00000411423 AGPAT4Q9NRZ5 378 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 ERRFI1Q9UJM3 462 aaPredicted RBP17.81■□□□□ 0.44
SF3A1-202ENST00000411423 PCTPQ9UKL6 214 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 IKBKGQ9Y6K9 419 aa17.81■□□□□ 0.44
SF3A1-202ENST00000411423 A0A088AWK7 358 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 PPP6CO00743 305 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 PRKRAO75569 313 aaKnown RBP17.8■□□□□ 0.44
SF3A1-202ENST00000411423 AGFG2O95081 481 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 ZNF10P21506 573 aaPredicted RBP17.8■□□□□ 0.44
SF3A1-202ENST00000411423 CNTFP26441 200 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 NEK2P51955 445 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 SLC13A2Q13183 592 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 CPSF6Q16630 551 aaKnown RBP eCLIP17.8■□□□□ 0.44
SF3A1-202ENST00000411423 SPINK14Q6IE38 97 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 ADGRD1Q6QNK2 874 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 FAM180AQ6UWF9 173 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 TRMT10CQ7L0Y3 403 aaKnown RBP17.8■□□□□ 0.44
SF3A1-202ENST00000411423 ZNF595Q8IYB9 648 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 L3MBTL4Q8NA19 623 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 CMTM7Q96FZ5 175 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 TBCDQ9BTW9 1192 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 LYRM4Q9HD34 91 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 TEKT2Q9UIF3 430 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 TSC22D4Q9Y3Q8 395 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 LRRK2Q5S007 2527 aa17.8■□□□□ 0.44
SF3A1-202ENST00000411423 FOXO6A8MYZ6 492 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 H0YIV9 168 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 LDB3O75112 727 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 NEURL1O76050 574 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 SNRPAP09012 282 aaKnown RBP17.79■□□□□ 0.44
SF3A1-202ENST00000411423 RBP1P09455 135 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 COL6A2P12110 1019 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 MLF1P58340 268 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 ID2Q02363 134 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 TRAF3Q13114 568 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 SLC29A2Q14542 456 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 OR1C1Q15619 314 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 ZRSR2Q15696 482 aaKnown RBP17.79■□□□□ 0.44
SF3A1-202ENST00000411423 TMEM35AQ53FP2 167 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 ZNF766Q5HY98 468 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 HIST2H2BCQ6DN03 193 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 OR4C11Q6IEV9 310 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 TIFABQ6ZNK6 161 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 C16orf47Q6ZP98 133 aaPredicted RBP17.79■□□□□ 0.44
SF3A1-202ENST00000411423 TAOK1Q7L7X3 1001 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 RPS19BP1Q86WX3 136 aaKnown RBP17.79■□□□□ 0.44
SF3A1-202ENST00000411423 SLC5A8Q8N695 610 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 BCORP1Q8N888 145 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 ZNF321PQ8N8H1 164 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 B3GNT7Q8NFL0 401 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 MZB1Q8WU39 189 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 UCN3Q969E3 161 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 NCLNQ969V3 563 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 ANKRD9Q96BM1 317 aaPredicted RBP17.79■□□□□ 0.44
SF3A1-202ENST00000411423 SCMH1Q96GD3 660 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 KLHL1Q9NR64 748 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 OLAHQ9NV23 265 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 TMEM216Q9P0N5 145 aa17.79■□□□□ 0.44
SF3A1-202ENST00000411423 FBXW2Q9UKT8 454 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms