RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 COL5A1P20908 1838 aaPredicted RBP6.13□□□□□ -1.43
USP40-202ENST00000409945 TP73O15350 636 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 SEC31AO94979 1220 aaKnown RBP6.13□□□□□ -1.43
USP40-202ENST00000409945 EPOP01588 193 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 HLA-DPA1P20036 260 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 TRIM23P36406 574 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 EIF3EP60228 445 aaKnown RBP6.13□□□□□ -1.43
USP40-202ENST00000409945 SEMG2Q02383 582 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 RALGDSQ12967 914 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 SHBQ15464 509 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 PDPK2PQ6A1A2 396 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 HIST2H2BCQ6DN03 193 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 HIST2H2BDQ6DRA6 164 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 ZNF813Q6ZN06 617 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 SLC25A45Q8N413 288 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 OTUD6BQ8N6M0 293 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 CCDC89Q8N998 374 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 TRIM58Q8NG06 486 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 ARRDC2Q8TBH0 407 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 IMP4Q96G21 291 aaKnown RBP6.13□□□□□ -1.43
USP40-202ENST00000409945 APOLD1Q96LR9 279 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 TTC25Q96NG3 672 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 QKIQ96PU8 341 aaKnown RBP eCLIP6.13□□□□□ -1.43
USP40-202ENST00000409945 LYSMD1Q96S90 227 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 MYCBPQ99417 103 aaPredicted RBP6.13□□□□□ -1.43
USP40-202ENST00000409945 ITPAQ9BY32 194 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 FRMD8P1Q9BZ68 369 aaPredicted RBP6.13□□□□□ -1.43
USP40-202ENST00000409945 GOLPH3Q9H4A6 298 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 MAGEE1Q9HCI5 957 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 SNTG1Q9NSN8 517 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 OGFRQ9NZT2 677 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 CPED1A4D0V7 1026 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 TMX2-CTNND1H3BSU7 103 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 ADAM10O14672 748 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 KCNN4O15554 427 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 PSMD3O43242 534 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 PPFIA2O75334 1257 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 FGF1P05230 155 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 SLC2A4P14672 509 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 PTPN3P26045 913 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 ACADVLP49748 655 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 TMPRSS3P57727 454 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 OTUD4Q01804 1114 aaKnown RBP6.12□□□□□ -1.43
USP40-202ENST00000409945 ZBTB17Q13105 803 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 DNAJC3Q13217 504 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 RPS6KA1Q15418 735 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 DEFB133Q30KQ1 61 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 FAM205BPQ63HN1 556 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 KDELC2Q7Z4H8 507 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 GALNT13Q8IUC8 556 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 ARL10Q8N8L6 244 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 AVL9Q8NBF6 648 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 MAPK15Q8TD08 544 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 KRT35Q92764 455 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 TSACCQ96A04 125 aaPredicted RBP6.12□□□□□ -1.43
USP40-202ENST00000409945 NXPE2Q96DL1 559 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 ERP27Q96DN0 273 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 ZSCAN5AQ9BUG6 496 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 SPATA16Q9BXB7 569 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 TMEM184CQ9NVA4 438 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 TRNAU1APQ9NX07 287 aaKnown RBP6.12□□□□□ -1.43
USP40-202ENST00000409945 MKLN1Q9UL63 735 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 TFR2Q9UP52 801 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 GPR34Q9UPC5 381 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 OSGIN2Q9Y236 505 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 DOCK9Q9BZ29 2069 aa6.12□□□□□ -1.43
USP40-202ENST00000409945 CTAGE15A4D2H0 777 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 OR6C68A6NDL8 312 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 C2orf81A6NN90 581 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 GPR89AB7ZAQ6 455 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 ATP8B1O43520 1251 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 GUCY1B2O75343 617 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 CLDN7O95471 211 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 MLYCDO95822 493 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 FTCDO95954 541 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 SLC4A1P02730 911 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 GPR89BP0CG08 455 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 CTAGE8P0CG41 777 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 VCLP18206 1134 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 SPINT3P49223 89 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 LMAN1P49257 510 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 STC1P52823 247 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 CDK3Q00526 305 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 CKAP4Q07065 602 aaKnown RBP6.11□□□□□ -1.43
USP40-202ENST00000409945 NIPAL4Q0D2K0 466 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 C1orf61Q13536 156 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 ALG11Q2TAA5 492 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 TEX35Q5T0J7 233 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 CFAP161Q6P656 301 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 INO80CQ6PI98 192 aaPredicted RBP6.11□□□□□ -1.43
USP40-202ENST00000409945 EFL1Q7Z2Z2 1120 aaKnown RBP6.11□□□□□ -1.43
USP40-202ENST00000409945 HSD11B1LQ7Z5J1 315 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 PXKQ7Z7A4 578 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 CTAGE6Q86UF2 777 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 CTAGE4Q8IX94 777 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 RBFAQ8N0V3 343 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 GHDCQ8N2G8 530 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 LRRC57Q8N9N7 239 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 IPMKQ8NFU5 416 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 GDAP1Q8TB36 358 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms