RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CSTF2P33240 577 aaKnown RBP eCLIP12.77□□□□□ -0.36
LIMS1-204ENST00000409441 GRK3P35626 688 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 CHN2P52757 468 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 RELAQ04206 551 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 PUM1Q14671 1186 aaKnown RBP eCLIP12.77□□□□□ -0.36
LIMS1-204ENST00000409441 KCNAB1Q14722 419 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 C16orf72Q14CZ0 275 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 MTX3Q5HYI7 312 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 RABL3Q5HYI8 236 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 TBCELQ5QJ74 424 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 TMTC4Q5T4D3 741 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 LIPJQ5W064 366 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 UGT2A3Q6UWM9 527 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 TMPRSS12Q86WS5 348 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 PLD3Q8IV08 490 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 D2HGDHQ8N465 521 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 LIX1Q8N485 282 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 DNAJC22Q8N4W6 341 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 PACRGLQ8N7B6 248 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 PAPD5Q8NDF8 572 aaKnown RBP12.77□□□□□ -0.36
LIMS1-204ENST00000409441 ZNF740Q8NDX6 193 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 SLC13A3Q8WWT9 602 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 SELENOMQ8WWX9 145 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 CMTM7Q96FZ5 175 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 ZNF597Q96LX8 424 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 CGREF1Q99674 301 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 STRADBQ9C0K7 418 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 FAM192AQ9GZU8 254 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 SPNS1Q9H2V7 528 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 ELOVL6Q9H5J4 265 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 CLMPQ9H6B4 373 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 FARSBQ9NSD9 589 aaKnown RBP12.77□□□□□ -0.36
LIMS1-204ENST00000409441 EGFL7Q9UHF1 273 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 MAGEL2Q9UJ55 1249 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 PILRAQ9UKJ1 303 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 PCDHB3Q9Y5E6 796 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 AP4B1Q9Y6B7 739 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 CFAP54Q96N23 3096 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 A0A0J9YVX5 310 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 HAT1O14929 419 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 OR1F1O43749 312 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 LCMT2O60294 686 aaKnown RBP12.77□□□□□ -0.37
LIMS1-204ENST00000409441 PDYNP01213 254 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 FOLR1P15328 257 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 CD22P20273 847 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 MLLT3P42568 568 aaPredicted RBP12.77□□□□□ -0.37
LIMS1-204ENST00000409441 HNRNPFP52597 415 aaKnown RBP12.77□□□□□ -0.37
LIMS1-204ENST00000409441 HMGCS1Q01581 520 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 TARDBPQ13148 414 aaKnown RBP eCLIP12.77□□□□□ -0.37
LIMS1-204ENST00000409441 LAPTM5Q13571 262 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 E2F2Q14209 437 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 MAP7Q14244 749 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 SLBPQ14493 270 aaKnown RBP eCLIP12.77□□□□□ -0.37
LIMS1-204ENST00000409441 RBBP5Q15291 538 aaKnown RBP12.77□□□□□ -0.37
LIMS1-204ENST00000409441 HIST2H2ACQ16777 129 aaPredicted RBP12.77□□□□□ -0.37
LIMS1-204ENST00000409441 ZC3H12BQ5HYM0 836 aaKnown RBP12.77□□□□□ -0.37
LIMS1-204ENST00000409441 PAGE2BQ5JRK9 111 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 HIST2H2AA3Q6FI13 130 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 HMBOX1Q6NT76 420 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 SPPL2CQ8IUH8 684 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 MCATQ8IVS2 390 aaKnown RBP12.77□□□□□ -0.37
LIMS1-204ENST00000409441 ADGRG5Q8IZF4 528 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 CACTIN-AS1Q8N1I8 211 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 KRT78Q8N1N4 520 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 AGBL5Q8NDL9 886 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 TRPV3Q8NET8 790 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 TNIP2Q8NFZ5 429 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 PPWD1Q96BP3 646 aaKnown RBP12.77□□□□□ -0.37
LIMS1-204ENST00000409441 FCRL4Q96PJ5 515 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 CMKLR1Q99788 373 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 SH3GL1Q99961 368 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 EFCAB11Q9BUY7 163 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 OSBPL11Q9BXB4 747 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 ACPTQ9BZG2 426 aa12.77□□□□□ -0.37
LIMS1-204ENST00000409441 TCRBV5S2A0A599 114 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 TRBC2A0A5B9 178 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 FAM149AA5PLN7 773 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 AKAP10O43572 662 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 HCRTR1O43613 425 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 TIPRLO75663 272 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 FASP25445 335 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 HNF4AP41235 474 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 CLDN8P56748 225 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 REEP5Q00765 189 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 CSTF3Q12996 717 aaKnown RBP12.76□□□□□ -0.37
LIMS1-204ENST00000409441 CPSF6Q16630 551 aaKnown RBP eCLIP12.76□□□□□ -0.37
LIMS1-204ENST00000409441 SGO1Q5FBB7 561 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 INTS11Q5TA45 600 aaKnown RBP12.76□□□□□ -0.37
LIMS1-204ENST00000409441 PPP4R4Q6NUP7 873 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 TMIGD1Q6UXZ0 262 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 MSANTD1Q6ZTZ1 278 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 TBC1D19Q8N5T2 526 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 METTL2AQ96IZ6 378 aaKnown RBP12.76□□□□□ -0.37
LIMS1-204ENST00000409441 FCRL1Q96LA6 429 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 OR2A5Q96R48 311 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 ZFYVE21Q9BQ24 234 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 SARGQ9BW04 601 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 PITHD1Q9GZP4 211 aaPredicted RBP12.76□□□□□ -0.37
LIMS1-204ENST00000409441 NT5DC2Q9H857 520 aa12.76□□□□□ -0.37
LIMS1-204ENST00000409441 COQ10BQ9H8M1 238 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms