RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 OR4F3Q6IEY1 312 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 OGFOD2Q6N063 350 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 FAM198BQ6UWH4 519 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 GSG1LQ6UXU4 331 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 DGLUCYQ7Z3D6 616 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 PXKQ7Z7A4 578 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 SERINC5Q86VE9 423 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 SCML4Q8N228 414 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 OR5L2Q8NGL0 311 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 FANK1Q8TC84 345 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 RNF128Q8TEB7 428 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 EBPLQ9BY08 206 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 SLC5A7Q9GZV3 580 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 SAV1Q9H4B6 383 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 ADAP2Q9NPF8 381 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 ZDHHC7Q9NXF8 308 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 CNOT2Q9NZN8 540 aaKnown RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 KIF25Q9UIL4 384 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 PCDHGC4Q9Y5F7 938 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 ANKRD26Q9UPS8 1709 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 GXYLT2A0PJZ3 443 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 GJE1A6NN92 205 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 GPR89AB7ZAQ6 455 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 PEX12O00623 359 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 ERI3O43414 337 aaKnown RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF821O75541 412 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 OR7A10O76100 309 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 VNN1O95497 513 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 GPR89BP0CG08 455 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 MYCLP1P12525 358 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 GTF2F2P13984 249 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 THBS2P35442 1172 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 DLSTP36957 453 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 RPS15AP62244 130 aaKnown RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 TRA2BP62995 288 aaKnown RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 MEF2DQ14814 521 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 CHRFAM7AQ494W8 412 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 KIAA0319Q5VV43 1072 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 CNKSR3Q6P9H4 555 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 C6orf120Q7Z4R8 191 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 ADAMTS19Q8TE59 1207 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 LPPQ93052 612 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 RTP4Q96DX8 246 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 PKP4Q99569 1192 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 MROQ9BYG7 248 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 GLIS2Q9BZE0 524 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 MIR1-1HGQ9H1L0 117 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 XPNPEP1Q9NQW7 623 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 B4GALT7Q9UBV7 327 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 ADM5C9JUS6 153 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 CASC3O15234 703 aaKnown RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 CLEC3AO75596 197 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 DDNO94850 711 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 BCHEP06276 602 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 LPLP06858 475 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 CSF1P09603 554 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 HNRNPA1P09651 372 aaKnown RBP eCLIP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 THEGLP0DJG4 465 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 C1GALT1C1LP0DN25 315 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 CAPN3P20807 821 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 KCNC1P48547 511 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 MEF2AQ02078 507 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 RAB31Q13636 194 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 GRM2Q14416 872 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 RAB30Q15771 203 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 BCL2A1Q16548 175 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 DEFB115Q30KQ5 88 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 WDR45BQ5MNZ6 344 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 JAGN1Q8N5M9 183 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ACBD7Q8N6N7 88 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 NLGN2Q8NFZ4 835 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 NEIL3Q8TAT5 605 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 NSMAFQ92636 917 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ARL11Q969Q4 196 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 KCNC2Q96PR1 638 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 GAL3ST4Q96RP7 486 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 TSNAXQ99598 290 aaKnown RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 RAD9AQ99638 391 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 MCHR1Q99705 422 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 EBF4Q9BQW3 602 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 EXTL2Q9UBQ6 330 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 A6NIZ1 184 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 C2orf74A8MZ97 194 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 H3BSA7 217 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 OR2B3O76000 313 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 TP53P04637 393 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 HCKP08631 526 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 TYRP14679 529 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 SLC6A8P48029 635 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 CLCNKBP51801 687 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 CASP9P55211 416 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ARF3P61204 181 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 RAP1BP61224 184 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 RAP1AP62834 184 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 NKX3-2P78367 333 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ARF1P84077 181 aaKnown RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 IRF4Q15306 451 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 SOWAHAQ2M3V2 549 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 DPY19L2P1Q6NXN4 242 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 TRMT10BQ6PF06 316 aaKnown RBP5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms