RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CAPN7Q9Y6W3 813 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 DNAJB6O75190 326 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 SLC22A3O75751 556 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 RNH1P13489 461 aaKnown RBP17.09■□□□□ 0.33
SDC1-203ENST00000403076 PRPS1L1P21108 318 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 FBLP22087 321 aaKnown RBP17.09■□□□□ 0.33
SDC1-203ENST00000403076 TLX1P31314 330 aaPredicted RBP17.09■□□□□ 0.33
SDC1-203ENST00000403076 HPCAL1P37235 193 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 BUD31P41223 144 aaPredicted RBP17.09■□□□□ 0.33
SDC1-203ENST00000403076 ALDH9A1P49189 494 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 MAT1AQ00266 395 aaKnown RBP17.09■□□□□ 0.33
SDC1-203ENST00000403076 AGKQ53H12 422 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 ARHGAP40Q5TG30 622 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 TMPRSS7Q7RTY8 843 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 DSELQ8IZU8 1212 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 CA13Q8N1Q1 262 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 KRTCAP2Q8N6L1 136 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 DDA1Q9BW61 102 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 WDR41Q9HAD4 459 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 LYRM4Q9HD34 91 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 TEX10Q9NXF1 929 aaPredicted RBP17.09■□□□□ 0.33
SDC1-203ENST00000403076 MS4A12Q9NXJ0 267 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 ZIM2Q9NZV7 527 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 MAPRE3Q9UPY8 281 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 ATG4BQ9Y4P1 393 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 ASB4Q9Y574 426 aa17.09■□□□□ 0.33
SDC1-203ENST00000403076 A0A1W2PNU3 283 aaPredicted RBP17.08■□□□□ 0.32
SDC1-203ENST00000403076 TNFSF15O95150 251 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 GPX3P22352 226 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 CLNS1AP54105 237 aaKnown RBP17.08■□□□□ 0.32
SDC1-203ENST00000403076 RAB38P57729 211 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 KLC1Q07866 573 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 ABHD18Q0P651 414 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 KLF10Q13118 480 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 HEPACAMQ14CZ8 416 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 SYT16Q17RD7 645 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 NDUFAF5Q5TEU4 345 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 FAM71E1Q6IPT2 247 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 IKBIPQ70UQ0 350 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 SLC38A9Q8NBW4 561 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 PROKR1Q8TCW9 393 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.08■□□□□ 0.32
SDC1-203ENST00000403076 STARD8Q92502 1023 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 ERP27Q96DN0 273 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 SLC45A3Q96JT2 553 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 MYLK2Q9H1R3 596 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 ZNF385DQ9H6B1 395 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 MIEF1Q9NQG6 463 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 CCDC167Q9P0B6 97 aa17.08■□□□□ 0.32
SDC1-203ENST00000403076 A0A1W2PR48 441 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 ANKRD28O15084 1053 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 PROM1O43490 865 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 PRMT3O60678 531 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 KLK3P07288 261 aaPredicted RBP17.07■□□□□ 0.32
SDC1-203ENST00000403076 PIM1P11309 404 aaPredicted RBP17.07■□□□□ 0.32
SDC1-203ENST00000403076 DRD2P14416 443 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 ZNF28P17035 718 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 AGXTP21549 392 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 ADSLP30566 484 aaPredicted RBP17.07■□□□□ 0.32
SDC1-203ENST00000403076 MRPL19P49406 292 aaKnown RBP17.07■□□□□ 0.32
SDC1-203ENST00000403076 GABREP78334 506 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 DCDP81605 110 aaKnown RBP17.07■□□□□ 0.32
SDC1-203ENST00000403076 SHC2P98077 582 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 MC1RQ01726 317 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 DSG2Q14126 1118 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 R3HCC1LQ7Z5L2 792 aaKnown RBP17.07■□□□□ 0.32
SDC1-203ENST00000403076 OR9I1Q8NGQ6 314 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 OR51Q1Q8NH59 317 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.07■□□□□ 0.32
SDC1-203ENST00000403076 PEX11GQ96HA9 241 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 GBP5Q96PP8 586 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 PRPF18Q99633 342 aaKnown RBP17.07■□□□□ 0.32
SDC1-203ENST00000403076 ACTL8Q9H568 366 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 REEP4Q9H6H4 257 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 POLR1BQ9H9Y6 1135 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 KCMF1Q9P0J7 381 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 TRPC4Q9UBN4 977 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 MAP4K5Q9Y4K4 846 aa17.07■□□□□ 0.32
SDC1-203ENST00000403076 TMEM184BQ9Y519 407 aaPredicted RBP17.07■□□□□ 0.32
SDC1-203ENST00000403076 C9JVG2 144 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 AIFM1O95831 613 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 NR2F6P10588 404 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 COX7A2P14406 83 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 JAK1P23458 1154 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 PIK3R1P27986 724 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 RBMS1P29558 406 aaKnown RBP17.06■□□□□ 0.32
SDC1-203ENST00000403076 RPL3P39023 403 aaKnown RBP17.06■□□□□ 0.32
SDC1-203ENST00000403076 PLA2G5P39877 138 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 POLR2JP52435 117 aaKnown RBP17.06■□□□□ 0.32
SDC1-203ENST00000403076 TNFRSF17Q02223 184 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 PGS1Q32NB8 556 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 NKAIN1Q4KMZ8 207 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 C18orf63Q68DL7 685 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 CLNKQ7Z7G1 428 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 MMP21Q8N119 569 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 FITM2Q8N6M3 262 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 FAM47BQ8NA70 645 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 GLB1L3Q8NCI6 653 aaPredicted RBP17.06■□□□□ 0.32
SDC1-203ENST00000403076 TEX37Q96LM6 180 aa17.06■□□□□ 0.32
SDC1-203ENST00000403076 CCDC106Q9BWC9 280 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms