RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 NDUFAF1Q9Y375 327 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 UNC13CQ8NB66 2214 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 AGRPO00253 132 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 POLR1CO15160 346 aaPredicted RBP13.47□□□□□ -0.25
SKA1-202ENST00000398452 HYAL3O43820 417 aaPredicted RBP13.47□□□□□ -0.25
SKA1-202ENST00000398452 EEDO75530 441 aaKnown RBP13.47□□□□□ -0.25
SKA1-202ENST00000398452 KLHL18O94889 574 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 TBX6O95947 436 aaPredicted RBP13.47□□□□□ -0.25
SKA1-202ENST00000398452 IL3P08700 152 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 DRD2P14416 443 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 CPN2P22792 545 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 KIR3DL1P43629 444 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 GABRA4P48169 554 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 PRSS12P56730 875 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 RAE1P78406 368 aaKnown RBP13.47□□□□□ -0.25
SKA1-202ENST00000398452 SHC2P98077 582 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 KCNC4Q03721 635 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 ZFP36L1Q07352 338 aaKnown RBP13.47□□□□□ -0.25
SKA1-202ENST00000398452 KLC1Q07866 573 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 ACTN3Q08043 901 aaPredicted RBP13.47□□□□□ -0.25
SKA1-202ENST00000398452 ART3Q13508 389 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 IL11RAQ14626 422 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 PGS1Q32NB8 556 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 CPTPQ5TA50 214 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 C6orf89Q6UWU4 347 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 GK5Q6ZS86 529 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 UBE3DQ7Z6J8 389 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 GLRX5Q86SX6 157 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 GPR180Q86V85 440 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 OR9I1Q8NGQ6 314 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 OR1L3Q8NH93 324 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 PROKR1Q8TCW9 393 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 ZNF501Q96CX3 271 aaPredicted RBP13.47□□□□□ -0.25
SKA1-202ENST00000398452 MTERF3Q96E29 417 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 SPDL1Q96EA4 605 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 MVB12AQ96EY5 273 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 MMABQ96EY8 250 aaPredicted RBP13.47□□□□□ -0.25
SKA1-202ENST00000398452 ZNF285Q96NJ3 590 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 TEFMQ96QE5 360 aaKnown RBP13.47□□□□□ -0.25
SKA1-202ENST00000398452 REEP4Q9H6H4 257 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 NDE1Q9NXR1 346 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 SH3BP4Q9P0V3 963 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 MRPS33Q9Y291 106 aaKnown RBP13.47□□□□□ -0.25
SKA1-202ENST00000398452 NAALAD2Q9Y3Q0 740 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 RP1P56715 2156 aa13.47□□□□□ -0.25
SKA1-202ENST00000398452 USP24Q9UPU5 2620 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 A0A0A6YYC8 382 aaPredicted RBP13.46□□□□□ -0.25
SKA1-202ENST00000398452 A0A0A6YYD5 115 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 C1orf226A1L170 272 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 FITM1A5D6W6 292 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 I3L1I5 382 aaPredicted RBP13.46□□□□□ -0.25
SKA1-202ENST00000398452 SCAMP2O15127 329 aaKnown RBP13.46□□□□□ -0.25
SKA1-202ENST00000398452 GALR3O60755 368 aaPredicted RBP13.46□□□□□ -0.25
SKA1-202ENST00000398452 SCELO95171 688 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 NSA2O95478 260 aaKnown RBP13.46□□□□□ -0.25
SKA1-202ENST00000398452 MT-CO3P00414 261 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 JMJD7P0C870 316 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 SMIM10L1P0DMW3 83 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 TACR1P25103 407 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 LRRC74AQ0VAA2 488 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 EIF3IQ13347 325 aaKnown RBP13.46□□□□□ -0.25
SKA1-202ENST00000398452 FAM174BQ3ZCQ3 159 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 ANXA8L1Q5VT79 327 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 BLOC1S3Q6QNY0 202 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 DHRS13Q6UX07 377 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 ZNF793Q6ZN11 406 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 TTLL10Q6ZVT0 673 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 DSELQ8IZU8 1212 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 POU5F2Q8N7G0 328 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 TESCQ96BS2 214 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 CLIP3Q96DZ5 547 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 C11orf24Q96F05 449 aaPredicted RBP13.46□□□□□ -0.25
SKA1-202ENST00000398452 SMIM10Q96HG1 83 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 SCNM1Q9BWG6 230 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 YIPF2Q9BWQ6 316 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 CLMPQ9H6B4 373 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 ACTR5Q9H9F9 607 aaPredicted RBP13.46□□□□□ -0.25
SKA1-202ENST00000398452 EFCAB1Q9HAE3 211 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 LYRM4Q9HD34 91 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 ARL8BQ9NVJ2 186 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 LEF1Q9UJU2 399 aaPredicted RBP13.46□□□□□ -0.25
SKA1-202ENST00000398452 PCDHGB4Q9UN71 923 aa13.46□□□□□ -0.25
SKA1-202ENST00000398452 SNRNP200O75643 2136 aaKnown RBP13.46□□□□□ -0.26
SKA1-202ENST00000398452 IGF2RP11717 2491 aa13.46□□□□□ -0.26
SKA1-202ENST00000398452 A0A1W2PP18 115 aa13.45□□□□□ -0.26
SKA1-202ENST00000398452 ZNF860A6NHJ4 632 aa13.45□□□□□ -0.26
SKA1-202ENST00000398452 CAPN14A8MX76 684 aa13.45□□□□□ -0.26
SKA1-202ENST00000398452 H0YIG0 161 aa13.45□□□□□ -0.26
SKA1-202ENST00000398452 SGK494L7N484 410 aa13.45□□□□□ -0.26
SKA1-202ENST00000398452 CASC3O15234 703 aaKnown RBP13.45□□□□□ -0.26
SKA1-202ENST00000398452 ZNF749O43361 778 aa13.45□□□□□ -0.26
SKA1-202ENST00000398452 HCRTR1O43613 425 aa13.45□□□□□ -0.26
SKA1-202ENST00000398452 CSO75390 466 aaKnown RBP13.45□□□□□ -0.26
SKA1-202ENST00000398452 SCRG1O75711 98 aa13.45□□□□□ -0.26
SKA1-202ENST00000398452 CBX6O95503 412 aa13.45□□□□□ -0.26
SKA1-202ENST00000398452 NR2F6P10588 404 aa13.45□□□□□ -0.26
SKA1-202ENST00000398452 PIM1P11309 404 aaPredicted RBP13.45□□□□□ -0.26
SKA1-202ENST00000398452 DDCP20711 480 aa13.45□□□□□ -0.26
SKA1-202ENST00000398452 C21orf58P58505 322 aa13.45□□□□□ -0.26
SKA1-202ENST00000398452 RAB15P59190 212 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms