RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 FLRT2O43155 660 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 PROM1O43490 865 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 ZNF280AP59817 542 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 MS4A13Q5J8X5 152 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 MPP7Q5T2T1 576 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 SPRYD7Q5W111 196 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 ZNF101Q8IZC7 436 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 LMO3Q8TAP4 145 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 TRUB1Q8WWH5 349 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC7A6OSQ96CW6 309 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 TTYH2Q9BSA4 534 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 PAK1IP1Q9NWT1 392 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 MS4A12Q9NXJ0 267 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 CNOT11Q9UKZ1 510 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 SH3PXD2BA1X283 911 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 NDUFS4O43181 175 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 NR2C1P13056 603 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 LEPRP48357 1165 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 CLCNKAP51800 687 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 PDX1P52945 283 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 PTGR1Q14914 329 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 PPP1R3AQ16821 1122 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 ZNF674Q2M3X9 581 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 DCST2Q5T1A1 773 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 DPPA2Q7Z7J5 298 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 MINDY1Q8N5J2 469 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 JAGN1Q8N5M9 183 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 ESX1Q8N693 406 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 ANKFN1Q8N957 763 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 GNPDA2Q8TDQ7 276 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 TFGQ92734 400 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 BORCS6Q96GS4 357 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 OR51I1Q9H343 314 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 ACTR10Q9NZ32 417 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 RBPJLQ9UBG7 517 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 ZNF223Q9UK11 482 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 PCDHGB5Q9Y5G0 923 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 C10orf71Q711Q0 1435 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 ZNF726A6NNF4 738 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 KCNQ1P51787 676 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 LAPTM4AQ15012 233 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC35G1Q2M3R5 365 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 PPP2R2DQ66LE6 453 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 PDZD9Q8IXQ8 264 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 UBQLNLQ8IYU4 475 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 DENND1AQ8TEH3 1009 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 DPCDQ9BVM2 203 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 ADAM7Q9H2U9 754 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 OR51B5Q9H339 312 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 REEP4Q9H6H4 257 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 CARS2Q9HA77 564 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 MEAF6Q9HAF1 191 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 Q9N2J8 555 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 SCP2D1Q9UJQ7 156 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 YARS2Q9Y2Z4 477 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 AOC2O75106 756 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 CHMP24386 653 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 LSAMPQ13449 338 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 CEACAM7Q14002 265 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 GID4Q8IVV7 300 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 SCML4Q8N228 414 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 PSD4Q8NDX1 1056 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 DGAT2Q96PD7 388 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 ACSL5Q9ULC5 683 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 ERVK-19Q9WJR5 959 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 DLGAP4Q9Y2H0 992 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 CLCA3PQ9Y6N3 262 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 A0A0U1RQF3 1178 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 SCGB1D2O95969 90 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 CSF2P04141 144 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 HTR1AP08908 422 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 DGKEP52429 567 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 CTBP2P56545 445 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 GINS1Q14691 196 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 PIGGQ5H8A4 983 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 PLEKHS1Q5SXH7 462 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 TMEM236Q5W0B7 351 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 ZSWIM9Q86XI8 627 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 RNF130Q86XS8 419 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 PRSS58Q8IYP2 241 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 ZDHHC14Q8IZN3 488 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 SLAIN1Q8ND83 568 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 EIF5A2Q9GZV4 153 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 AIG1Q9NVV5 245 aa9.89□□□□□ -0.83
LIMCH1-203ENST00000396595 ZNF878C9JN71 531 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 GMDSO60547 372 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 GABARAPL2P60520 117 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 COL28A1Q2UY09 1125 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 FAM182AQ5T1J6 154 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 LRRC66Q68CR7 880 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 ALG1LQ6GMV1 187 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 TMED4Q7Z7H5 227 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 PIAS4Q8N2W9 510 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 SHKBP1Q8TBC3 707 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 TRIB3Q96RU7 358 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 A0A1W2PRU2 124 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 AHSA1O95433 338 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 RFC2P35250 354 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 TLE2Q04725 743 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms